data_YVZ
# 
_chem_comp.id                                    YVZ 
_chem_comp.name                                  "(1R,2S,5S)-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-N-{(2R)-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H37 F3 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-24 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        502.570 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YVZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FY6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YVZ C1  C1  C 0 1 N N N N N N 17.855 11.314 21.632 -4.513 -2.730 1.755  C1  YVZ 1  
YVZ C2  C2  C 0 1 N N N N N N 17.066 12.010 22.447 -5.316 -1.781 0.864  C2  YVZ 2  
YVZ C3  C3  C 0 1 N N R N N N 17.586 11.999 23.881 -4.451 -0.575 0.494  C3  YVZ 3  
YVZ C4  C4  C 0 1 N N N N N N 16.663 11.144 24.773 -5.292 0.433  -0.292 C4  YVZ 4  
YVZ C5  C5  C 0 1 N N S N N N 17.205 11.044 26.311 -4.468 1.698  -0.544 C5  YVZ 5  
YVZ C6  C6  C 0 1 N N N N N N 18.259 10.297 26.352 -4.132 2.399  0.793  C6  YVZ 6  
YVZ C7  C7  C 0 1 N N N N N N 18.138 9.295  27.727 -4.222 3.890  0.398  C7  YVZ 7  
YVZ N1  N1  N 0 1 N N N N N N 16.879 9.202  28.058 -5.132 3.936  -0.752 N1  YVZ 8  
YVZ C8  C8  C 0 1 N N N N N N 16.101 10.313 27.206 -5.285 2.720  -1.304 C8  YVZ 9  
YVZ O1  O1  O 0 1 N N N N N N 14.935 10.548 27.227 -5.976 2.477  -2.270 O1  YVZ 10 
YVZ N2  N2  N 0 1 N N N N N N 17.593 13.368 24.391 -3.323 -1.018 -0.330 N2  YVZ 11 
YVZ C9  C9  C 0 1 N N N N N N 18.836 14.009 24.894 -2.097 -1.141 0.216  C9  YVZ 12 
YVZ O2  O2  O 0 1 N N N N N N 19.866 13.417 24.914 -1.928 -0.885 1.390  O2  YVZ 13 
YVZ C10 C10 C 0 1 N N S N N N 18.742 15.413 25.418 -0.937 -1.596 -0.631 C10 YVZ 14 
YVZ C11 C11 C 0 1 N N R N N N 19.276 16.392 24.609 -0.913 -3.137 -0.726 C11 YVZ 15 
YVZ C12 C12 C 0 1 N N S N N N 20.623 16.856 25.228 0.057  -3.589 0.385  C12 YVZ 16 
YVZ C13 C13 C 0 1 N N N N N N 20.742 16.093 26.628 0.534  -2.283 1.054  C13 YVZ 17 
YVZ N3  N3  N 0 1 N N N N N N 19.557 15.504 26.830 0.347  -1.241 0.018  N3  YVZ 18 
YVZ C14 C14 C 0 1 N N N N N N 19.004 14.983 28.108 1.160  -0.206 -0.271 C14 YVZ 19 
YVZ O3  O3  O 0 1 N N N N N N 17.925 14.483 28.105 0.905  0.524  -1.205 O3  YVZ 20 
YVZ C15 C15 C 0 1 N N S N N N 19.814 15.097 29.406 2.388  0.043  0.567  C15 YVZ 21 
YVZ N4  N4  N 0 1 N N N N N N 18.956 15.695 30.396 3.392  0.747  -0.236 N4  YVZ 22 
YVZ C16 C16 C 0 1 N N N N N N 19.117 17.117 30.719 4.698  0.645  0.078  C16 YVZ 23 
YVZ O4  O4  O 0 1 N N N N N N 19.948 17.773 30.180 5.043  -0.031 1.025  O4  YVZ 24 
YVZ C17 C17 C 0 1 N N N N N N 18.193 17.746 31.770 5.731  1.369  -0.747 C17 YVZ 25 
YVZ F1  F1  F 0 1 N N N N N N 18.200 19.107 31.633 5.665  0.923  -2.071 F1  YVZ 26 
YVZ F2  F2  F 0 1 N N N N N N 16.930 17.266 31.569 5.480  2.744  -0.705 F2  YVZ 27 
YVZ F3  F3  F 0 1 N N N N N N 18.625 17.397 33.019 7.005  1.111  -0.230 F3  YVZ 28 
YVZ C18 C18 C 0 1 N N N N N N 20.324 13.704 29.845 2.013  0.898  1.779  C18 YVZ 29 
YVZ C19 C19 C 0 1 N N N N N N 21.044 13.024 28.656 3.275  1.232  2.578  C19 YVZ 30 
YVZ C20 C20 C 0 1 N N N N N N 21.344 13.877 31.001 1.352  2.194  1.305  C20 YVZ 31 
YVZ C21 C21 C 0 1 N N N N N N 19.161 12.792 30.325 1.037  0.123  2.667  C21 YVZ 32 
YVZ C22 C22 C 0 1 N N N N N N 19.654 17.893 24.602 0.410  -3.816 -1.087 C22 YVZ 33 
YVZ C23 C23 C 0 1 N N N N N N 18.860 18.740 25.622 1.511  -2.941 -1.691 C23 YVZ 34 
YVZ C24 C24 C 0 1 N N N N N N 20.086 18.505 23.249 0.345  -5.251 -1.614 C24 YVZ 35 
YVZ H1  H1  H 0 1 N N N N N N 17.448 11.346 20.611 -4.210 -2.208 2.663  H1  YVZ 36 
YVZ H2  H2  H 0 1 N N N N N N 18.865 11.751 21.638 -5.129 -3.590 2.019  H2  YVZ 37 
YVZ H3  H3  H 0 1 N N N N N N 17.905 10.270 21.974 -3.627 -3.070 1.218  H3  YVZ 38 
YVZ H36 H4  H 0 1 N N N N N N 17.017 13.050 22.093 -5.620 -2.303 -0.043 H36 YVZ 39 
YVZ H37 H5  H 0 1 N N N N N N 16.058 11.569 22.430 -6.202 -1.441 1.401  H37 YVZ 40 
YVZ H4  H6  H 0 1 N N N N N N 18.602 11.577 23.900 -4.075 -0.105 1.402  H4  YVZ 41 
YVZ H5  H7  H 0 1 N N N N N N 15.660 11.596 24.780 -5.586 -0.004 -1.246 H5  YVZ 42 
YVZ H6  H8  H 0 1 N N N N N N 16.605 10.129 24.352 -6.183 0.688  0.281  H6  YVZ 43 
YVZ H7  H9  H 0 1 N N N N N N 17.365 12.062 26.696 -3.555 1.456  -1.087 H7  YVZ 44 
YVZ H8  H10 H 0 1 N N N N N N 18.315 9.680  25.443 -4.868 2.154  1.558  H8  YVZ 45 
YVZ H9  H11 H 0 1 N N N N N N 19.159 10.925 26.425 -3.126 2.144  1.126  H9  YVZ 46 
YVZ H10 H12 H 0 1 N N N N N N 18.536 8.296  27.495 -4.626 4.476  1.223  H10 YVZ 47 
YVZ H11 H13 H 0 1 N N N N N N 18.709 9.734  28.558 -3.238 4.265  0.115  H11 YVZ 48 
YVZ H12 H14 H 0 1 N N N N N N 16.479 8.563  28.715 -5.569 4.741  -1.073 H12 YVZ 49 
YVZ H13 H15 H 0 1 N N N N N N 16.739 13.888 24.402 -3.459 -1.222 -1.268 H13 YVZ 50 
YVZ H14 H16 H 0 1 N N N N N N 17.688 15.634 25.640 -0.996 -1.153 -1.625 H14 YVZ 51 
YVZ H15 H17 H 0 1 N N N N N N 19.487 15.985 23.609 -1.859 -3.647 -0.906 H15 YVZ 52 
YVZ H16 H18 H 0 1 N N N N N N 21.480 16.637 24.574 -0.167 -4.437 1.033  H16 YVZ 53 
YVZ H17 H19 H 0 1 N N N N N N 21.541 15.338 26.585 -0.076 -2.060 1.931  H17 YVZ 54 
YVZ H18 H20 H 0 1 N N N N N N 20.956 16.808 27.436 1.585  -2.359 1.331  H18 YVZ 55 
YVZ H19 H21 H 0 1 N N N N N N 20.684 15.745 29.223 2.796  -0.909 0.906  H19 YVZ 56 
YVZ H20 H22 H 0 1 N N N N N N 18.258 15.147 30.858 3.116  1.287  -0.993 H20 YVZ 57 
YVZ H22 H23 H 0 1 N N N N N N 21.408 12.033 28.965 3.970  1.783  1.945  H22 YVZ 58 
YVZ H21 H24 H 0 1 N N N N N N 20.341 12.911 27.818 3.008  1.840  3.441  H21 YVZ 59 
YVZ H23 H25 H 0 1 N N N N N N 21.895 13.645 28.339 3.746  0.308  2.915  H23 YVZ 60 
YVZ H25 H26 H 0 1 N N N N N N 20.850 14.360 31.857 0.454  1.956  0.736  H25 YVZ 61 
YVZ H24 H27 H 0 1 N N N N N N 21.724 12.891 31.305 1.085  2.803  2.168  H24 YVZ 62 
YVZ H26 H28 H 0 1 N N N N N N 22.182 14.503 30.660 2.047  2.746  0.672  H26 YVZ 63 
YVZ H29 H29 H 0 1 N N N N N N 18.645 13.270 31.171 1.544  -0.741 3.096  H29 YVZ 64 
YVZ H28 H30 H 0 1 N N N N N N 18.450 12.640 29.500 0.683  0.771  3.469  H28 YVZ 65 
YVZ H27 H31 H 0 1 N N N N N N 19.565 11.820 30.644 0.190  -0.212 2.069  H27 YVZ 66 
YVZ H31 H32 H 0 1 N N N N N N 18.647 18.134 26.515 1.774  -2.151 -0.987 H31 YVZ 67 
YVZ H30 H33 H 0 1 N N N N N N 19.454 19.620 25.909 2.389  -3.553 -1.896 H30 YVZ 68 
YVZ H32 H34 H 0 1 N N N N N N 17.914 19.069 25.168 1.153  -2.497 -2.619 H32 YVZ 69 
YVZ H34 H35 H 0 1 N N N N N N 20.325 19.570 23.387 -0.250 -5.276 -2.527 H34 YVZ 70 
YVZ H33 H36 H 0 1 N N N N N N 20.975 17.976 22.874 1.354  -5.605 -1.828 H33 YVZ 71 
YVZ H35 H37 H 0 1 N N N N N N 19.266 18.404 22.523 -0.114 -5.894 -0.863 H35 YVZ 72 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YVZ C1  C2  SING N N 1  
YVZ C2  C3  SING N N 2  
YVZ C24 C22 SING N N 3  
YVZ C3  N2  SING N N 4  
YVZ C3  C4  SING N N 5  
YVZ N2  C9  SING N N 6  
YVZ C22 C11 SING N N 7  
YVZ C22 C12 SING N N 8  
YVZ C22 C23 SING N N 9  
YVZ C11 C12 SING N N 10 
YVZ C11 C10 SING N N 11 
YVZ C4  C5  SING N N 12 
YVZ C9  O2  DOUB N N 13 
YVZ C9  C10 SING N N 14 
YVZ C12 C13 SING N N 15 
YVZ C10 N3  SING N N 16 
YVZ C5  C6  SING N N 17 
YVZ C5  C8  SING N N 18 
YVZ C6  C7  SING N N 19 
YVZ C13 N3  SING N N 20 
YVZ N3  C14 SING N N 21 
YVZ C8  O1  DOUB N N 22 
YVZ C8  N1  SING N N 23 
YVZ C7  N1  SING N N 24 
YVZ O3  C14 DOUB N N 25 
YVZ C14 C15 SING N N 26 
YVZ C19 C18 SING N N 27 
YVZ C15 C18 SING N N 28 
YVZ C15 N4  SING N N 29 
YVZ C18 C21 SING N N 30 
YVZ C18 C20 SING N N 31 
YVZ O4  C16 DOUB N N 32 
YVZ N4  C16 SING N N 33 
YVZ C16 C17 SING N N 34 
YVZ F2  C17 SING N N 35 
YVZ F1  C17 SING N N 36 
YVZ C17 F3  SING N N 37 
YVZ C1  H1  SING N N 38 
YVZ C1  H2  SING N N 39 
YVZ C1  H3  SING N N 40 
YVZ C2  H36 SING N N 41 
YVZ C2  H37 SING N N 42 
YVZ C3  H4  SING N N 43 
YVZ C4  H5  SING N N 44 
YVZ C4  H6  SING N N 45 
YVZ C5  H7  SING N N 46 
YVZ C6  H8  SING N N 47 
YVZ C6  H9  SING N N 48 
YVZ C7  H10 SING N N 49 
YVZ C7  H11 SING N N 50 
YVZ N1  H12 SING N N 51 
YVZ N2  H13 SING N N 52 
YVZ C10 H14 SING N N 53 
YVZ C11 H15 SING N N 54 
YVZ C12 H16 SING N N 55 
YVZ C13 H17 SING N N 56 
YVZ C13 H18 SING N N 57 
YVZ C15 H19 SING N N 58 
YVZ N4  H20 SING N N 59 
YVZ C19 H22 SING N N 60 
YVZ C19 H21 SING N N 61 
YVZ C19 H23 SING N N 62 
YVZ C20 H25 SING N N 63 
YVZ C20 H24 SING N N 64 
YVZ C20 H26 SING N N 65 
YVZ C21 H29 SING N N 66 
YVZ C21 H28 SING N N 67 
YVZ C21 H27 SING N N 68 
YVZ C23 H31 SING N N 69 
YVZ C23 H30 SING N N 70 
YVZ C23 H32 SING N N 71 
YVZ C24 H34 SING N N 72 
YVZ C24 H33 SING N N 73 
YVZ C24 H35 SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YVZ SMILES           ACDLabs              12.01 "CC1(C)C2C(C(=O)NC(CC3CCNC3=O)CC)N(CC21)C(=O)C(NC(=O)C(F)(F)F)C(C)(C)C"                                                                                                                                           
YVZ InChI            InChI                1.06  "InChI=1S/C24H37F3N4O4/c1-7-13(10-12-8-9-28-18(12)32)29-19(33)16-15-14(23(15,5)6)11-31(16)20(34)17(22(2,3)4)30-21(35)24(25,26)27/h12-17H,7-11H2,1-6H3,(H,28,32)(H,29,33)(H,30,35)/t12-,13+,14-,15-,16-,17+/m0/s1" 
YVZ InChIKey         InChI                1.06  QIKPVUMAJHNNAL-FHULIHMCSA-N                                                                                                                                                                                       
YVZ SMILES_CANONICAL CACTVS               3.385 "CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@@H]2[C@@H]3[C@H](CN2C(=O)[C@@H](NC(=O)C(F)(F)F)C(C)(C)C)C3(C)C"                                                                                                                 
YVZ SMILES           CACTVS               3.385 "CC[CH](C[CH]1CCNC1=O)NC(=O)[CH]2[CH]3[CH](CN2C(=O)[CH](NC(=O)C(F)(F)F)C(C)(C)C)C3(C)C"                                                                                                                           
YVZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@@H]2[C@@H]3[C@@H](C3(C)C)CN2C(=O)[C@H](C(C)(C)C)NC(=O)C(F)(F)F"                                                                                                                 
YVZ SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(CC1CCNC1=O)NC(=O)C2C3C(C3(C)C)CN2C(=O)C(C(C)(C)C)NC(=O)C(F)(F)F"                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YVZ "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S,5S)-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-N-{(2R)-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-azabicyclo[3.1.0]hexane-2-carboxamide"                                                            
YVZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-3-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-6,6-dimethyl-~{N}-[(2~{R})-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YVZ "Create component" 2023-02-24 RCSB 
YVZ "Initial release"  2024-07-24 RCSB 
YVZ "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YVZ 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C2 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
