data_IVZ
# 
_chem_comp.id                                    IVZ 
_chem_comp.name                                  "(2~{R})-2-azanyl-5-[[2-[[3-methyl-2,6-bis(oxidanylidene)-7-(phenylmethyl)purin-8-yl]methyl]-1~{H}-benzimidazol-5-yl]amino]-5-oxidanylidene-pentanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H26 N8 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-04-14 
_chem_comp.pdbx_modified_date                    2022-09-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        530.535 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IVZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZIG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IVZ C4  C1  C 0 1 Y N N -19.754 8.371  -17.251 3.854   -1.839 -0.788 C4  IVZ 1  
IVZ C5  C2  C 0 1 Y N N -20.384 7.232  -16.898 4.125   -1.227 0.429  C5  IVZ 2  
IVZ C6  C3  C 0 1 N N N -21.699 7.066  -17.162 4.703   -1.988 1.468  C6  IVZ 3  
IVZ C8  C4  C 0 1 Y N N -18.309 7.136  -16.325 3.237   0.228  -0.949 C8  IVZ 4  
IVZ N1  N1  N 0 1 N N N -22.385 8.067  -17.806 4.979   -3.292 1.254  N1  IVZ 5  
IVZ N3  N2  N 0 1 N N N -20.408 9.357  -17.863 4.165   -3.180 -0.947 N3  IVZ 6  
IVZ O   O1  O 0 1 N N N -6.788  0.265  -21.712 -10.120 -1.273 2.310  O   IVZ 7  
IVZ C   C5  C 0 1 N N N -7.201  1.050  -20.842 -9.982  -0.523 1.373  C   IVZ 8  
IVZ OXT O2  O 0 1 N N N -6.773  1.138  -19.667 -10.678 0.623  1.322  OXT IVZ 9  
IVZ CA  C6  C 0 1 N N R -8.368  1.959  -21.238 -9.028  -0.875 0.261  CA  IVZ 10 
IVZ N   N3  N 0 1 N N N -8.082  2.571  -22.540 -8.764  -2.320 0.281  N   IVZ 11 
IVZ CB  C7  C 0 1 N N N -8.644  2.910  -20.057 -7.715  -0.114 0.455  CB  IVZ 12 
IVZ CG  C8  C 0 1 N N N -9.099  4.342  -20.386 -6.793  -0.374 -0.738 CG  IVZ 13 
IVZ CD  C9  C 0 1 N N N -10.352 4.580  -19.522 -5.500  0.376  -0.547 CD  IVZ 14 
IVZ OE1 O3  O 0 1 N N N -10.456 4.002  -18.434 -5.332  1.052  0.447  OE1 IVZ 15 
IVZ NE2 N4  N 0 1 N N N -11.280 5.375  -20.110 -4.530  0.296  -1.479 NE2 IVZ 16 
IVZ CBB C10 C 0 1 Y N N -12.500 5.641  -19.593 -3.293  0.914  -1.257 CBB IVZ 17 
IVZ CAO C11 C 0 1 Y N N -12.836 5.758  -18.240 -2.134  0.315  -1.714 CAO IVZ 18 
IVZ CAM C12 C 0 1 Y N N -13.515 5.833  -20.525 -3.237  2.132  -0.581 CAM IVZ 19 
IVZ CAN C13 C 0 1 Y N N -14.817 6.110  -20.107 -2.027  2.750  -0.357 CAN IVZ 20 
IVZ CBH C14 C 0 1 Y N N -15.090 6.193  -18.804 -0.854  2.158  -0.806 CBH IVZ 21 
IVZ NAW N5  N 0 1 Y N N -16.241 6.462  -18.177 0.482   2.509  -0.744 NAW IVZ 22 
IVZ CBG C15 C 0 1 Y N N -14.109 6.027  -17.886 -0.901  0.933  -1.492 CBG IVZ 23 
IVZ NAT N6  N 0 1 Y N N -14.674 6.167  -16.679 0.379   0.607  -1.809 NAT IVZ 24 
IVZ CBC C16 C 0 1 Y N N -15.965 6.436  -16.874 1.187   1.525  -1.365 CBC IVZ 25 
IVZ CAR C17 C 0 1 N N N -16.971 6.678  -15.751 2.685   1.507  -1.526 CAR IVZ 26 
IVZ N9  N7  N 0 1 Y N N -18.471 8.316  -16.898 3.317   -0.912 -1.586 N9  IVZ 27 
IVZ CAA C18 C 0 1 N N N -19.670 10.583 -18.240 3.889   -3.849 -2.221 CAA IVZ 28 
IVZ C2  C19 C 0 1 N N N -21.708 9.227  -18.154 4.711   -3.871 0.071  C2  IVZ 29 
IVZ O2  O4  O 0 1 N N N -22.300 10.133 -18.733 4.978   -5.047 -0.087 O2  IVZ 30 
IVZ O6  O5  O 0 1 N N N -22.340 6.047  -16.871 4.951   -1.475 2.544  O6  IVZ 31 
IVZ N7  N8  N 0 1 Y N N -19.462 6.444  -16.316 3.723   0.087  0.299  N7  IVZ 32 
IVZ CAS C20 C 0 1 N N N -19.711 5.084  -15.744 3.809   1.130  1.324  CAS IVZ 33 
IVZ CBA C21 C 0 1 Y N N -19.652 4.042  -16.697 5.104   1.884  1.167  CBA IVZ 34 
IVZ CAK C22 C 0 1 Y N N -19.829 2.729  -16.268 5.132   3.069  0.454  CAK IVZ 35 
IVZ CAI C23 C 0 1 Y N N -19.777 1.670  -17.174 6.320   3.760  0.309  CAI IVZ 36 
IVZ CAH C24 C 0 1 Y N N -19.550 1.928  -18.522 7.480   3.267  0.876  CAH IVZ 37 
IVZ CAJ C25 C 0 1 Y N N -19.383 3.236  -18.961 7.452   2.083  1.589  CAJ IVZ 38 
IVZ CAL C26 C 0 1 Y N N -19.436 4.291  -18.050 6.263   1.394  1.739  CAL IVZ 39 
IVZ H1  H1  H 0 1 N N N -23.356 7.961  -18.020 5.377   -3.819 1.965  H1  IVZ 40 
IVZ H2  H2  H 0 1 N N N -6.075  0.507  -19.536 -11.278 0.805  2.059  H2  IVZ 41 
IVZ H3  H3  H 0 1 N N N -9.255  1.319  -21.351 -9.469  -0.600 -0.697 H3  IVZ 42 
IVZ H4  H4  H 0 1 N N N -8.841  3.166  -22.803 -8.177  -2.592 -0.494 H4  IVZ 43 
IVZ H5  H5  H 0 1 N N N -7.242  3.111  -22.477 -8.354  -2.601 1.160  H5  IVZ 44 
IVZ H7  H7  H 0 1 N N N -9.429  2.449  -19.440 -7.922  0.954  0.529  H7  IVZ 45 
IVZ H8  H8  H 0 1 N N N -7.716  2.986  -19.472 -7.230  -0.454 1.370  H8  IVZ 46 
IVZ H9  H9  H 0 1 N N N -8.311  5.065  -20.129 -6.587  -1.441 -0.812 H9  IVZ 47 
IVZ H10 H10 H 0 1 N N N -9.345  4.432  -21.454 -7.279  -0.034 -1.653 H10 IVZ 48 
IVZ H11 H11 H 0 1 N N N -11.045 5.794  -20.987 -4.689  -0.190 -2.303 H11 IVZ 49 
IVZ H12 H12 H 0 1 N N N -12.078 5.633  -17.481 -2.182  -0.627 -2.241 H12 IVZ 50 
IVZ H13 H13 H 0 1 N N N -13.293 5.767  -21.580 -4.149  2.593  -0.232 H13 IVZ 51 
IVZ H14 H14 H 0 1 N N N -15.601 6.257  -20.836 -1.991  3.693  0.167  H14 IVZ 52 
IVZ H15 H15 H 0 1 N N N -17.128 6.645  -18.600 0.849   3.308  -0.335 H15 IVZ 53 
IVZ H17 H17 H 0 1 N N N -17.118 5.744  -15.189 3.118   2.359  -1.001 H17 IVZ 54 
IVZ H18 H18 H 0 1 N N N -16.581 7.454  -15.076 2.938   1.567  -2.585 H18 IVZ 55 
IVZ H19 H19 H 0 1 N N N -18.623 10.496 -17.915 4.757   -3.758 -2.874 H19 IVZ 56 
IVZ H20 H20 H 0 1 N N N -19.706 10.711 -19.332 3.680   -4.903 -2.040 H20 IVZ 57 
IVZ H21 H21 H 0 1 N N N -20.133 11.454 -17.753 3.026   -3.383 -2.696 H21 IVZ 58 
IVZ H22 H22 H 0 1 N N N -20.711 5.079  -15.286 2.971   1.819  1.213  H22 IVZ 59 
IVZ H23 H23 H 0 1 N N N -18.953 4.889  -14.971 3.773   0.672  2.313  H23 IVZ 60 
IVZ H24 H24 H 0 1 N N N -20.009 2.529  -15.222 4.225   3.454  0.011  H24 IVZ 61 
IVZ H25 H25 H 0 1 N N N -19.912 0.655  -16.831 6.342   4.685  -0.247 H25 IVZ 62 
IVZ H26 H26 H 0 1 N N N -19.504 1.112  -19.228 8.409   3.807  0.763  H26 IVZ 63 
IVZ H27 H27 H 0 1 N N N -19.212 3.436  -20.008 8.359   1.697  2.031  H27 IVZ 64 
IVZ H28 H28 H 0 1 N N N -19.309 5.306  -18.396 6.241   0.469  2.295  H28 IVZ 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IVZ N   CA  SING N N 1  
IVZ O   C   DOUB N N 2  
IVZ CA  C   SING N N 3  
IVZ CA  CB  SING N N 4  
IVZ C   OXT SING N N 5  
IVZ CAM CAN DOUB Y N 6  
IVZ CAM CBB SING Y N 7  
IVZ CG  CB  SING N N 8  
IVZ CG  CD  SING N N 9  
IVZ NE2 CBB SING N N 10 
IVZ NE2 CD  SING N N 11 
IVZ CAN CBH SING Y N 12 
IVZ CBB CAO DOUB Y N 13 
IVZ CD  OE1 DOUB N N 14 
IVZ CAJ CAH DOUB Y N 15 
IVZ CAJ CAL SING Y N 16 
IVZ CBH NAW SING Y N 17 
IVZ CBH CBG DOUB Y N 18 
IVZ O2  C2  DOUB N N 19 
IVZ CAH CAI SING Y N 20 
IVZ CAO CBG SING Y N 21 
IVZ CAA N3  SING N N 22 
IVZ NAW CBC SING Y N 23 
IVZ C2  N3  SING N N 24 
IVZ C2  N1  SING N N 25 
IVZ CAL CBA DOUB Y N 26 
IVZ CBG NAT SING Y N 27 
IVZ N3  C4  SING N N 28 
IVZ N1  C6  SING N N 29 
IVZ C4  C5  DOUB Y N 30 
IVZ C4  N9  SING Y N 31 
IVZ CAI CAK DOUB Y N 32 
IVZ C6  C5  SING N N 33 
IVZ C6  O6  DOUB N N 34 
IVZ C5  N7  SING Y N 35 
IVZ N9  C8  DOUB Y N 36 
IVZ CBC NAT DOUB Y N 37 
IVZ CBC CAR SING N N 38 
IVZ CBA CAK SING Y N 39 
IVZ CBA CAS SING N N 40 
IVZ C8  N7  SING Y N 41 
IVZ C8  CAR SING N N 42 
IVZ N7  CAS SING N N 43 
IVZ N1  H1  SING N N 44 
IVZ OXT H2  SING N N 45 
IVZ CA  H3  SING N N 46 
IVZ N   H4  SING N N 47 
IVZ N   H5  SING N N 48 
IVZ CB  H7  SING N N 49 
IVZ CB  H8  SING N N 50 
IVZ CG  H9  SING N N 51 
IVZ CG  H10 SING N N 52 
IVZ NE2 H11 SING N N 53 
IVZ CAO H12 SING N N 54 
IVZ CAM H13 SING N N 55 
IVZ CAN H14 SING N N 56 
IVZ NAW H15 SING N N 57 
IVZ CAR H17 SING N N 58 
IVZ CAR H18 SING N N 59 
IVZ CAA H19 SING N N 60 
IVZ CAA H20 SING N N 61 
IVZ CAA H21 SING N N 62 
IVZ CAS H22 SING N N 63 
IVZ CAS H23 SING N N 64 
IVZ CAK H24 SING N N 65 
IVZ CAI H25 SING N N 66 
IVZ CAH H26 SING N N 67 
IVZ CAJ H27 SING N N 68 
IVZ CAL H28 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IVZ InChI            InChI                1.06  "InChI=1S/C26H26N8O5/c1-33-23-22(24(36)32-26(33)39)34(13-14-5-3-2-4-6-14)20(31-23)12-19-29-17-9-7-15(11-18(17)30-19)28-21(35)10-8-16(27)25(37)38/h2-7,9,11,16H,8,10,12-13,27H2,1H3,(H,28,35)(H,29,30)(H,37,38)(H,32,36,39)/t16-/m1/s1" 
IVZ InChIKey         InChI                1.06  YQQGCBNTUKQEBJ-MRXNPFEDSA-N                                                                                                                                                                                                            
IVZ SMILES_CANONICAL CACTVS               3.385 "CN1C(=O)NC(=O)c2n(Cc3ccccc3)c(Cc4[nH]c5ccc(NC(=O)CC[C@@H](N)C(O)=O)cc5n4)nc12"                                                                                                                                                        
IVZ SMILES           CACTVS               3.385 "CN1C(=O)NC(=O)c2n(Cc3ccccc3)c(Cc4[nH]c5ccc(NC(=O)CC[CH](N)C(O)=O)cc5n4)nc12"                                                                                                                                                          
IVZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2c(n(c(n2)Cc3[nH]c4ccc(cc4n3)NC(=O)CC[C@H](C(=O)O)N)Cc5ccccc5)C(=O)NC1=O"                                                                                                                                                         
IVZ SMILES           "OpenEye OEToolkits" 2.0.7 "CN1c2c(n(c(n2)Cc3[nH]c4ccc(cc4n3)NC(=O)CCC(C(=O)O)N)Cc5ccccc5)C(=O)NC1=O"                                                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           IVZ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-2-azanyl-5-[[2-[[3-methyl-2,6-bis(oxidanylidene)-7-(phenylmethyl)purin-8-yl]methyl]-1~{H}-benzimidazol-5-yl]amino]-5-oxidanylidene-pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IVZ "Create component"  2022-04-14 PDBE 
IVZ "Modify descriptor" 2022-08-22 RCSB 
IVZ "Initial release"   2022-09-07 RCSB 
# 
