data_DLZ
#

_chem_comp.id                                   DLZ
_chem_comp.name                                 "1-deoxy-1-(6,7-dimethyl-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl)-D-ribitol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H18 N4 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "6,7-dimethyl-8-(1'-D-ribityl) lumazine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-06-16
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       326.305
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DLZ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3A3G
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DLZ  C7      C7      C  0  1  N  N  N  16.928  -7.168  -18.903   0.007   3.141  -0.454  C7      DLZ   1  
DLZ  C7A     C7A     C  0  1  N  N  N  17.234  -5.985  -19.577   1.018   2.046  -0.232  C7A     DLZ   2  
DLZ  C5A     C5A     C  0  1  N  N  N  18.391  -5.939  -20.359   2.245   2.349   0.315  C5A     DLZ   3  
DLZ  C6      C6      C  0  1  N  N  N  19.251  -7.053  -20.406   2.559   3.776   0.686  C6      DLZ   4  
DLZ  N5      N5      N  0  1  N  N  N  18.672  -4.766  -21.092   3.153   1.410   0.523  N5      DLZ   5  
DLZ  C4A     C4A     C  0  1  N  N  N  17.833  -3.616  -21.020   2.898   0.155   0.206  C4A     DLZ   6  
DLZ  C4      C4      C  0  1  N  N  N  18.100  -2.390  -21.668   3.885  -0.920   0.422  C4      DLZ   7  
DLZ  O4      O4      O  0  1  N  N  N  19.093  -2.168  -22.363   4.978  -0.687   0.904  O4      DLZ   8  
DLZ  N3      N3      N  0  1  N  N  N  17.195  -1.346  -21.578   3.528  -2.174   0.063  N3      DLZ   9  
DLZ  C2      C2      C  0  1  N  N  N  16.054  -1.475  -20.832   2.318  -2.415  -0.467  C2      DLZ  10  
DLZ  O2      O2      O  0  1  N  N  N  15.251  -0.555  -20.737   2.038  -3.561  -0.775  O2      DLZ  11  
DLZ  N1      N1      N  0  1  N  N  N  15.806  -2.645  -20.174   1.411  -1.467  -0.672  N1      DLZ  12  
DLZ  C8      C8      C  0  1  N  N  N  16.683  -3.703  -20.244   1.645  -0.199  -0.361  C8      DLZ  13  
DLZ  N8      N8      N  0  1  N  N  N  16.354  -4.855  -19.560   0.713   0.776  -0.566  N8      DLZ  14  
DLZ  "C1'"   "C1'"   C  0  1  N  N  N  15.088  -4.843  -18.779  -0.593   0.449  -1.144  "C1'"   DLZ  15  
DLZ  "C2'"   "C2'"   C  0  1  N  N  S  15.204  -4.089  -17.435  -1.605   0.219  -0.020  "C2'"   DLZ  16  
DLZ  "O2'"   "O2'"   O  0  1  N  N  N  16.244  -4.650  -16.601  -1.237  -0.946   0.721  "O2'"   DLZ  17  
DLZ  "C3'"   "C3'"   C  0  1  N  N  S  13.876  -4.262  -16.697  -2.999   0.024  -0.620  "C3'"   DLZ  18  
DLZ  "O3'"   "O3'"   O  0  1  N  N  N  12.905  -3.737  -17.577  -3.366   1.190  -1.360  "O3'"   DLZ  19  
DLZ  "C4'"   "C4'"   C  0  1  N  N  R  13.791  -3.487  -15.393  -4.010  -0.206   0.504  "C4'"   DLZ  20  
DLZ  "O4'"   "O4'"   O  0  1  N  N  N  14.674  -4.004  -14.377  -3.643  -1.372   1.245  "O4'"   DLZ  21  
DLZ  "C5'"   "C5'"   C  0  1  N  N  N  12.359  -3.549  -14.846  -5.404  -0.401  -0.096  "C5'"   DLZ  22  
DLZ  "O5'"   "O5'"   O  0  1  N  N  N  12.289  -2.538  -13.839  -6.366  -0.500   0.956  "O5'"   DLZ  23  
DLZ  H7      H7      H  0  1  N  N  N  16.847  -7.993  -19.627   0.202   3.627  -1.411  H7      DLZ  24  
DLZ  H7A     H7A     H  0  1  N  N  N  17.724  -7.393  -18.178  -0.996   2.714  -0.461  H7A     DLZ  25  
DLZ  H7B     H7B     H  0  1  N  N  N  15.971  -7.051  -18.373   0.084   3.875   0.348  H7B     DLZ  26  
DLZ  H6      H6      H  0  1  N  N  N  19.475  -7.300  -21.454   2.302   3.945   1.731  H6      DLZ  27  
DLZ  H6A     H6A     H  0  1  N  N  N  20.186  -6.817  -19.877   3.622   3.964   0.538  H6A     DLZ  28  
DLZ  H6B     H6B     H  0  1  N  N  N  18.763  -7.913  -19.923   1.979   4.450   0.055  H6B     DLZ  29  
DLZ  HN3     HN3     H  0  1  N  N  N  17.376  -0.490  -22.062   4.151  -2.907   0.190  HN3     DLZ  30  
DLZ  "H1'"   "H1'"   H  0  1  N  N  N  14.315  -4.348  -19.385  -0.929   1.275  -1.772  "H1'"   DLZ  31  
DLZ  "H1'A"  "H1'A"  H  0  0  N  N  N  14.837  -5.888  -18.547  -0.508  -0.455  -1.747  "H1'A"  DLZ  32  
DLZ  "H2'"   "H2'"   H  0  1  N  N  N  15.443  -3.035  -17.637  -1.613   1.084   0.644  "H2'"   DLZ  33  
DLZ  "HO2'"  "HO2'"  H  0  0  N  N  N  17.032  -4.773  -17.117  -1.138  -1.741   0.179  "HO2'"  DLZ  34  
DLZ  "H3'"   "H3'"   H  0  1  N  N  N  13.743  -5.322  -16.433  -2.990  -0.840  -1.284  "H3'"   DLZ  35  
DLZ  "HO3'"  "HO3'"  H  0  0  N  N  N  12.086  -3.619  -17.111  -3.394   1.999  -0.832  "HO3'"  DLZ  36  
DLZ  "H4'"   "H4'"   H  0  1  N  N  N  14.092  -2.454  -15.623  -4.019   0.659   1.168  "H4'"   DLZ  37  
DLZ  "HO4'"  "HO4'"  H  0  0  N  N  N  15.544  -4.118  -14.741  -3.615  -2.181   0.716  "HO4'"  DLZ  38  
DLZ  "H5'"   "H5'"   H  0  1  N  N  N  11.627  -3.356  -15.644  -5.648   0.449  -0.733  "H5'"   DLZ  39  
DLZ  "H5'A"  "H5'A"  H  0  0  N  N  N  12.123  -4.543  -14.439  -5.419  -1.316  -0.689  "H5'A"  DLZ  40  
DLZ  "HO5'"  "HO5'"  H  0  0  N  N  N  12.273  -2.946  -12.981  -7.274  -0.625   0.648  "HO5'"  DLZ  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DLZ  C7     C7A     SING  N  N   1  
DLZ  C7A    C5A     DOUB  N  N   2  
DLZ  C7A    N8      SING  N  N   3  
DLZ  C5A    C6      SING  N  N   4  
DLZ  C5A    N5      SING  N  N   5  
DLZ  N5     C4A     DOUB  N  N   6  
DLZ  C4A    C4      SING  N  N   7  
DLZ  C4A    C8      SING  N  N   8  
DLZ  C4     O4      DOUB  N  N   9  
DLZ  C4     N3      SING  N  N  10  
DLZ  N3     C2      SING  N  N  11  
DLZ  C2     O2      DOUB  N  N  12  
DLZ  C2     N1      SING  N  N  13  
DLZ  N1     C8      DOUB  N  N  14  
DLZ  C8     N8      SING  N  N  15  
DLZ  N8     "C1'"   SING  N  N  16  
DLZ  "C1'"  "C2'"   SING  N  N  17  
DLZ  "C2'"  "O2'"   SING  N  N  18  
DLZ  "C2'"  "C3'"   SING  N  N  19  
DLZ  "C3'"  "O3'"   SING  N  N  20  
DLZ  "C3'"  "C4'"   SING  N  N  21  
DLZ  "C4'"  "O4'"   SING  N  N  22  
DLZ  "C4'"  "C5'"   SING  N  N  23  
DLZ  "C5'"  "O5'"   SING  N  N  24  
DLZ  C7     H7      SING  N  N  25  
DLZ  C7     H7A     SING  N  N  26  
DLZ  C7     H7B     SING  N  N  27  
DLZ  C6     H6      SING  N  N  28  
DLZ  C6     H6A     SING  N  N  29  
DLZ  C6     H6B     SING  N  N  30  
DLZ  N3     HN3     SING  N  N  31  
DLZ  "C1'"  "H1'"   SING  N  N  32  
DLZ  "C1'"  "H1'A"  SING  N  N  33  
DLZ  "C2'"  "H2'"   SING  N  N  34  
DLZ  "O2'"  "HO2'"  SING  N  N  35  
DLZ  "C3'"  "H3'"   SING  N  N  36  
DLZ  "O3'"  "HO3'"  SING  N  N  37  
DLZ  "C4'"  "H4'"   SING  N  N  38  
DLZ  "O4'"  "HO4'"  SING  N  N  39  
DLZ  "C5'"  "H5'"   SING  N  N  40  
DLZ  "C5'"  "H5'A"  SING  N  N  41  
DLZ  "O5'"  "HO5'"  SING  N  N  42  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DLZ  SMILES            ACDLabs               10.04  "O=C2N=C1N(C(=C(N=C1C(=O)N2)C)C)CC(O)C(O)C(O)CO"  
DLZ  SMILES_CANONICAL  CACTVS                3.341  "CC1=C(C)N(C[C@H](O)[C@H](O)[C@H](O)CO)C2=NC(=O)NC(=O)C2=N1"  
DLZ  SMILES            CACTVS                3.341  "CC1=C(C)N(C[CH](O)[CH](O)[CH](O)CO)C2=NC(=O)NC(=O)C2=N1"  
DLZ  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC1=C(N(C2=NC(=O)NC(=O)C2=N1)C[C@@H]([C@@H]([C@@H](CO)O)O)O)C"  
DLZ  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1=C(N(C2=NC(=O)NC(=O)C2=N1)CC(C(C(CO)O)O)O)C"  
DLZ  InChI             InChI                 1.03   "InChI=1S/C13H18N4O6/c1-5-6(2)17(3-7(19)10(21)8(20)4-18)11-9(14-5)12(22)16-13(23)15-11/h7-8,10,18-21H,3-4H2,1-2H3,(H,16,22,23)/t7-,8+,10-/m0/s1"  
DLZ  InChIKey          InChI                 1.03   SXDXRJZUAJBNFL-XKSSXDPKSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DLZ  "SYSTEMATIC NAME"  ACDLabs               10.04  "1-deoxy-1-(6,7-dimethyl-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl)-D-ribitol"  
DLZ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "6,7-dimethyl-8-[(2S,3S,4R)-2,3,4,5-tetrahydroxypentyl]pteridine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DLZ  "Create component"   2009-06-16  PDBJ  
DLZ  "Modify descriptor"  2011-06-04  RCSB  
DLZ  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DLZ
_pdbx_chem_comp_synonyms.name        "6,7-dimethyl-8-(1'-D-ribityl) lumazine"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
