data_OAD
# 
_chem_comp.id                                    OAD 
_chem_comp.name                                  
;2'-O-ACETYL ADENOSINE-5-DIPHOSPHORIBOSE
;
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C17 H25 N5 O15 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2002-06-28 
_chem_comp.pdbx_modified_date                    2012-01-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        601.352 
_chem_comp.one_letter_code                       N 
_chem_comp.three_letter_code                     OAD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1M2N 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OAD PA     PA   P 0 1 N N S -1.318 49.780 42.103 0.237  3.220  -0.361 PA     OAD 1  
OAD O1A    O1A  O 0 1 N N N -2.072 49.858 43.419 0.564  3.285  -1.803 O1A    OAD 2  
OAD O2A    O2A  O 0 1 N N N -2.203 50.460 41.004 0.097  4.713  0.225  O2A    OAD 3  
OAD "O5'"  O5*  O 0 1 N N N -1.044 48.256 41.627 1.411  2.444  0.421  "O5'"  OAD 4  
OAD "C5'"  C5*  C 0 1 N N N -0.307 47.428 42.389 2.783  2.835  0.351  "C5'"  OAD 5  
OAD "C4'"  C4*  C 0 1 N N R -0.204 46.097 41.721 3.628  1.889  1.208  "C4'"  OAD 6  
OAD "O4'"  O4*  O 0 1 N N N 0.510  45.315 42.495 3.614  0.570  0.638  "O4'"  OAD 7  
OAD "C3'"  C3*  C 0 1 N N S -1.463 45.408 41.506 5.093  2.365  1.226  "C3'"  OAD 8  
OAD "O3'"  O3*  O 0 1 N N N -1.577 45.299 40.127 5.508  2.657  2.562  "O3'"  OAD 9  
OAD "C2'"  C2*  C 0 1 N N R -1.384 44.135 42.276 5.889  1.164  0.661  "C2'"  OAD 10 
OAD "O2'"  O2*  O 0 1 N N N -1.977 42.974 41.835 7.103  0.969  1.389  "O2'"  OAD 11 
OAD "C1'"  C1*  C 0 1 N N R 0.048  44.055 42.524 4.909  -0.014 0.894  "C1'"  OAD 12 
OAD N9     N9   N 0 1 Y N N 0.402  43.569 43.778 5.180  -1.104 -0.046 N9     OAD 13 
OAD C8     C8   C 0 1 Y N N -0.180 43.555 45.096 4.616  -1.265 -1.277 C8     OAD 14 
OAD N7     N7   N 0 1 Y N N 0.565  42.948 46.009 5.084  -2.341 -1.842 N7     OAD 15 
OAD C5     C5   C 0 1 Y N N 1.639  42.537 45.395 5.974  -2.936 -1.012 C5     OAD 16 
OAD C6     C6   C 0 1 Y N N 2.829  41.805 45.859 6.772  -4.090 -1.083 C6     OAD 17 
OAD N6     N6   N 0 1 N N N 2.979  41.408 47.171 6.743  -4.903 -2.202 N6     OAD 18 
OAD N1     N1   N 0 1 Y N N 3.856  41.512 44.867 7.555  -4.383 -0.049 N1     OAD 19 
OAD C2     C2   C 0 1 Y N N 3.740  41.909 43.478 7.589  -3.613 1.023  C2     OAD 20 
OAD N3     N3   N 0 1 Y N N 2.567  42.612 43.084 6.859  -2.523 1.133  N3     OAD 21 
OAD C4     C4   C 0 1 Y N N 1.549  42.912 44.033 6.050  -2.147 0.148  C4     OAD 22 
OAD O3A    O3A  O 0 1 N N N 0.093  50.492 42.245 -1.153 2.433  -0.161 O3A    OAD 23 
OAD PB     PB   P 0 1 N N R 0.871  51.054 40.968 -2.553 2.416  -0.955 PB     OAD 24 
OAD O1B    O1B  O 0 1 N N N 0.756  50.147 39.708 -2.294 2.339  -2.410 O1B    OAD 25 
OAD O2B    O2B  O 0 1 N N N 2.416  51.186 41.091 -3.373 3.762  -0.626 O2B    OAD 26 
OAD O2D    RO2* O 0 1 N N N 0.916  57.532 42.138 -7.086 -2.760 0.430  O2D    OAD 27 
OAD O5D    RO5* O 0 1 N N N 0.156  52.508 40.762 -3.416 1.137  -0.495 O5D    OAD 28 
OAD C5D    RC5* C 0 1 N N N 0.538  53.307 39.771 -4.664 0.784  -1.094 C5D    OAD 29 
OAD C4D    RC4* C 0 1 N N R 0.632  54.760 40.132 -5.213 -0.477 -0.424 C4D    OAD 30 
OAD O4D    RO4* O 0 1 N N N -0.513 55.472 40.099 -5.551 -0.196 0.939  O4D    OAD 31 
OAD C3D    RC3* C 0 1 N N R 1.204  55.107 41.511 -6.503 -0.932 -1.140 C3D    OAD 32 
OAD O3D    RO3* O 0 1 N N N 2.468  55.477 41.387 -6.235 -2.019 -2.029 O3D    OAD 33 
OAD C2D    RC2* C 0 1 N N R 0.378  56.255 41.949 -7.393 -1.394 0.046  C2D    OAD 34 
OAD C1D    RC1* C 0 1 N N S -0.725 56.152 41.163 -6.959 -0.394 1.146  C1D    OAD 35 
OAD O1D    RO1* O 0 1 N N N -1.182 57.366 40.625 -7.196 -0.948 2.442  O1D    OAD 36 
OAD C6D    RC6* C 0 1 N N N 0.741  58.332 43.255 -8.088 -3.488 0.947  C6D    OAD 37 
OAD O6D    RO6* O 0 1 N N N 1.288  58.148 44.469 -9.186 -2.999 1.074  O6D    OAD 38 
OAD C7D    RC7* C 0 1 N N N -0.156 59.550 43.095 -7.845 -4.914 1.368  C7D    OAD 39 
OAD HOA2   2HOA H 0 0 N N N -1.731 50.411 40.181 -0.117 4.747  1.168  HOA2   OAD 40 
OAD "H5'1" 1H5* H 0 0 N N N -0.702 47.348 43.429 3.122  2.788  -0.683 "H5'1" OAD 41 
OAD "H5'2" 2H5* H 0 0 N N N 0.693  47.857 42.631 2.890  3.854  0.723  "H5'2" OAD 42 
OAD "H'4"  4H*  H 0 1 N N N 0.238  46.299 40.718 3.233  1.858  2.224  "H'4"  OAD 43 
OAD "H'3"  3H*  H 0 1 N N N -2.388 45.914 41.869 5.217  3.241  0.589  "H'3"  OAD 44 
OAD "HO'3" 3HO* H 0 0 N N N -2.401 44.848 39.986 6.423  2.961  2.632  "HO'3" OAD 45 
OAD "H'2"  2H*  H 0 1 N N N -2.052 44.194 43.167 6.092  1.297  -0.402 "H'2"  OAD 46 
OAD "HO'2" 2HO* H 0 0 N N N -1.927 42.162 42.326 7.712  1.720  1.347  "HO'2" OAD 47 
OAD "H'1"  1H*  H 0 1 N N N 0.464  43.360 41.758 4.973  -0.368 1.923  "H'1"  OAD 48 
OAD H8     H8   H 0 1 N N N -1.150 43.989 45.392 3.890  -0.599 -1.718 H8     OAD 49 
OAD H61    1H6  H 0 1 N N N 2.158  40.859 47.425 6.168  -4.679 -2.950 H61    OAD 50 
OAD H62    2H6  H 0 1 N N N 3.804  40.901 47.493 7.299  -5.698 -2.239 H62    OAD 51 
OAD H2     H2   H 0 1 N N N 4.526  41.682 42.738 8.239  -3.888 1.840  H2     OAD 52 
OAD HOB2   2HOB H 0 0 N N N 2.879  51.520 40.332 -3.578 3.879  0.312  HOB2   OAD 53 
OAD H5R1   1H5R H 0 0 N N N -0.129 53.172 38.888 -5.373 1.602  -0.965 H5R1   OAD 54 
OAD H5R2   2H5R H 0 0 N N N 1.504  52.953 39.341 -4.517 0.595  -2.158 H5R2   OAD 55 
OAD "HR'4" 4HR* H 0 0 N N N 1.331  55.038 39.309 -4.467 -1.271 -0.463 "HR'4" OAD 56 
OAD "HR'3" 3HR* H 0 0 N N N 1.179  54.254 42.229 -6.964 -0.101 -1.674 "HR'3" OAD 57 
OAD HOR3   3HOR H 0 0 N N N 2.823  55.692 42.242 -7.014 -2.341 -2.502 HOR3   OAD 58 
OAD "HR'2" 2HR* H 0 0 N N N 0.185  56.163 43.043 -8.451 -1.283 -0.191 "HR'2" OAD 59 
OAD "HR'1" 1HR* H 0 0 N N N -1.453 55.695 41.873 -7.494 0.549  1.033  "HR'1" OAD 60 
OAD HOR1   1HOR H 0 0 N N N -1.339 57.871 41.414 -6.903 -0.384 3.171  HOR1   OAD 61 
OAD H7R1   1H7R H 0 0 N N N -1.151 59.232 42.705 -6.804 -5.176 1.178  H7R1   OAD 62 
OAD H7R2   2H7R H 0 0 N N N -0.297 60.194 43.994 -8.058 -5.020 2.431  H7R2   OAD 63 
OAD H7R3   3H7R H 0 0 N N N 0.209  60.172 42.245 -8.496 -5.577 0.799  H7R3   OAD 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OAD PA    O1A    DOUB N N 1  
OAD PA    O2A    SING N N 2  
OAD PA    "O5'"  SING N N 3  
OAD PA    O3A    SING N N 4  
OAD O2A   HOA2   SING N N 5  
OAD "O5'" "C5'"  SING N N 6  
OAD "C5'" "C4'"  SING N N 7  
OAD "C5'" "H5'1" SING N N 8  
OAD "C5'" "H5'2" SING N N 9  
OAD "C4'" "O4'"  SING N N 10 
OAD "C4'" "C3'"  SING N N 11 
OAD "C4'" "H'4"  SING N N 12 
OAD "O4'" "C1'"  SING N N 13 
OAD "C3'" "O3'"  SING N N 14 
OAD "C3'" "C2'"  SING N N 15 
OAD "C3'" "H'3"  SING N N 16 
OAD "O3'" "HO'3" SING N N 17 
OAD "C2'" "O2'"  SING N N 18 
OAD "C2'" "C1'"  SING N N 19 
OAD "C2'" "H'2"  SING N N 20 
OAD "O2'" "HO'2" SING N N 21 
OAD "C1'" N9     SING N N 22 
OAD "C1'" "H'1"  SING N N 23 
OAD N9    C8     SING Y N 24 
OAD N9    C4     SING Y N 25 
OAD C8    N7     DOUB Y N 26 
OAD C8    H8     SING N N 27 
OAD N7    C5     SING Y N 28 
OAD C5    C6     DOUB Y N 29 
OAD C5    C4     SING Y N 30 
OAD C6    N6     SING N N 31 
OAD C6    N1     SING Y N 32 
OAD N6    H61    SING N N 33 
OAD N6    H62    SING N N 34 
OAD N1    C2     DOUB Y N 35 
OAD C2    N3     SING Y N 36 
OAD C2    H2     SING N N 37 
OAD N3    C4     DOUB Y N 38 
OAD O3A   PB     SING N N 39 
OAD PB    O1B    DOUB N N 40 
OAD PB    O2B    SING N N 41 
OAD PB    O5D    SING N N 42 
OAD O2B   HOB2   SING N N 43 
OAD O2D   C2D    SING N N 44 
OAD O2D   C6D    SING N N 45 
OAD O5D   C5D    SING N N 46 
OAD C5D   C4D    SING N N 47 
OAD C5D   H5R1   SING N N 48 
OAD C5D   H5R2   SING N N 49 
OAD C4D   O4D    SING N N 50 
OAD C4D   C3D    SING N N 51 
OAD C4D   "HR'4" SING N N 52 
OAD O4D   C1D    SING N N 53 
OAD C3D   O3D    SING N N 54 
OAD C3D   C2D    SING N N 55 
OAD C3D   "HR'3" SING N N 56 
OAD O3D   HOR3   SING N N 57 
OAD C2D   C1D    SING N N 58 
OAD C2D   "HR'2" SING N N 59 
OAD C1D   O1D    SING N N 60 
OAD C1D   "HR'1" SING N N 61 
OAD O1D   HOR1   SING N N 62 
OAD C6D   O6D    DOUB N N 63 
OAD C6D   C7D    SING N N 64 
OAD C7D   H7R1   SING N N 65 
OAD C7D   H7R2   SING N N 66 
OAD C7D   H7R3   SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OAD SMILES           ACDLabs              10.04 "O=C(OC1C(O)C(OC1O)COP(=O)(O)OP(=O)(O)OCC4OC(n2c3ncnc(N)c3nc2)C(O)C4O)C" 
OAD InChI            InChI                1.03  
"InChI=1S/C17H25N5O15P2/c1-6(23)34-13-11(25)8(36-17(13)27)3-33-39(30,31)37-38(28,29)32-2-7-10(24)12(26)16(35-7)22-5-21-9-14(18)19-4-20-15(9)22/h4-5,7-8,10-13,16-17,24-27H,2-3H2,1H3,(H,28,29)(H,30,31)(H2,18,19,20)/t7-,8-,10-,11-,12-,13-,16-,17+/m1/s1" 
OAD InChIKey         InChI                1.03  BFNOPXRXIQJDHO-DLFWLGJNSA-N 
OAD SMILES_CANONICAL CACTVS               3.385 "CC(=O)O[C@H]1[C@@H](O)O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)[C@H]1O" 
OAD SMILES           CACTVS               3.385 "CC(=O)O[CH]1[CH](O)O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)[CH]1O" 
OAD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "CC(=O)O[C@@H]1[C@@H]([C@H](O[C@@H]1O)CO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)O" 
OAD SMILES           "OpenEye OEToolkits" 1.7.5 "CC(=O)OC1C(C(OC1O)COP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
OAD "SYSTEMATIC NAME" ACDLabs              10.04 
"(2S,3R,4R,5R)-5-({[(R)-{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-2,4-dihydroxytetrahydrofuran-3-yl acetate (non-preferred name)" 
OAD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,3R,4R,5R)-5-[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxymethyl]-2,4-dihydroxy-oxolan-3-yl] ethanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OAD "Create component"   2002-06-28 RCSB 
OAD "Modify descriptor"  2011-06-04 RCSB 
OAD "Modify descriptor"  2012-01-05 RCSB 
OAD "Modify coordinates" 2012-01-05 RCSB 
# 
