data_SWC
# 
_chem_comp.id                                    SWC 
_chem_comp.name                                  "N-{(2R)-2-hydroxy-3,3-dimethyl-4-[(trihydroxy-lambda~5~-phosphanyl)oxy]butanoyl}-beta-alanyl-N-(2-{4-[fluoro(dihydroxy)-lambda~4~-sulfanyl]phenyl}ethyl)-beta-alaninamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H33 F N3 O10 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-07-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        557.527 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SWC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8DLE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SWC C1  C1  C 0 1 N N N N N N -7.255  31.664 -33.735 -6.462  -0.239 -1.709 C1  SWC 1  
SWC C12 C2  C 0 1 N N N N N N -7.995  32.305 -34.903 -5.386  -0.292 -0.622 C12 SWC 2  
SWC C14 C3  C 0 1 N N N N N N -8.987  34.527 -34.952 -2.977  -0.624 -0.470 C14 SWC 3  
SWC C15 C4  C 0 1 N N N N N N -8.790  35.980 -34.594 -1.633  -0.877 -1.106 C15 SWC 4  
SWC C16 C5  C 0 1 N N N N N N -8.327  36.073 -33.145 -0.557  -0.930 -0.019 C16 SWC 5  
SWC C19 C6  C 0 1 N N N N N N -9.783  36.403 -31.235 1.852   -1.263 0.133  C19 SWC 6  
SWC C2  C7  C 0 1 Y N N N N N -8.098  31.736 -32.482 -7.805  0.014  -1.074 C2  SWC 7  
SWC C20 C8  C 0 1 N N N N N N -11.212 36.203 -30.785 3.195   -1.515 -0.502 C20 SWC 8  
SWC C21 C9  C 0 1 N N N N N N -12.131 36.265 -32.000 4.271   -1.568 0.584  C21 SWC 9  
SWC C24 C10 C 0 1 N N N N N N -12.580 38.217 -33.391 6.680   -1.901 0.736  C24 SWC 10 
SWC C25 C11 C 0 1 N N R N N N -12.064 39.117 -34.479 8.004   -2.264 0.115  C25 SWC 11 
SWC C26 C12 C 0 1 N N N N N N -12.622 38.721 -35.844 8.547   -1.065 -0.667 C26 SWC 12 
SWC C27 C13 C 0 1 N N N N N N -14.009 39.317 -36.036 8.602   0.159  0.250  C27 SWC 13 
SWC C3  C14 C 0 1 Y N N N N N -9.247  30.961 -32.375 -8.251  1.309  -0.893 C3  SWC 14 
SWC C30 C15 C 0 1 N N N N N N -12.692 37.206 -35.992 9.953   -1.384 -1.177 C30 SWC 15 
SWC C31 C16 C 0 1 N N N N N N -11.700 39.274 -36.925 7.627   -0.773 -1.854 C31 SWC 16 
SWC C4  C17 C 0 1 Y N N N N N -10.022 31.021 -31.222 -9.483  1.541  -0.310 C4  SWC 17 
SWC C5  C18 C 0 1 Y N N N N N -9.646  31.853 -30.174 -10.269 0.477  0.091  C5  SWC 18 
SWC C6  C19 C 0 1 Y N N N N N -8.497  32.629 -30.281 -9.823  -0.819 -0.090 C6  SWC 19 
SWC C7  C20 C 0 1 Y N N N N N -7.720  32.566 -31.433 -8.593  -1.051 -0.677 C7  SWC 20 
SWC N13 N1  N 0 1 N N N N N N -7.911  33.752 -34.856 -4.080  -0.538 -1.240 N13 SWC 21 
SWC N18 N2  N 0 1 N N N N N N -9.357  35.626 -32.226 0.748   -1.176 -0.637 N18 SWC 22 
SWC N23 N3  N 0 1 N N N N N N -11.729 37.303 -32.931 5.576   -1.814 -0.033 N23 SWC 23 
SWC O10 O1  O 0 1 N N N N N N -9.741  32.429 -27.770 -12.117 -0.856 1.007  O10 SWC 24 
SWC O17 O2  O 0 1 N N N N N N -10.079 34.115 -35.308 -3.065  -0.499 0.733  O17 SWC 25 
SWC O22 O3  O 0 1 N N N N N N -9.076  37.239 -30.696 1.764   -1.137 1.336  O22 SWC 26 
SWC O28 O4  O 0 1 N N N N N N -13.718 38.339 -32.966 6.607   -1.686 1.927  O28 SWC 27 
SWC O29 O5  O 0 1 N N N N N N -12.439 40.470 -34.190 8.930   -2.620 1.143  O29 SWC 28 
SWC O32 O6  O 0 1 N N N N N N -14.571 38.825 -37.252 9.108   1.278  -0.481 O32 SWC 29 
SWC O34 O7  O 0 1 N N N N N N -16.657 40.223 -36.847 10.149  2.627  1.382  O34 SWC 30 
SWC O36 O8  O 0 1 N N N N N N -16.657 38.555 -38.691 10.011  3.713  -0.893 O36 SWC 31 
SWC O9  O9  O 0 1 N N N N N N -11.647 32.808 -29.069 -13.361 1.059  1.555  O9  SWC 32 
SWC P33 P1  P 0 1 N N N N N N -15.832 39.564 -37.927 9.302   2.736  0.173  P33 SWC 33 
SWC S8  S1  S 0 1 N N N N N N -10.538 31.923 -28.852 -11.882 0.780  0.855  S8  SWC 34 
SWC H1  H1  H 0 1 N N N N N N -7.045  30.611 -33.972 -6.233  0.566  -2.407 H1  SWC 35 
SWC H2  H2  H 0 1 N N N N N N -6.308  32.198 -33.567 -6.485  -1.189 -2.243 H2  SWC 36 
SWC H3  H3  H 0 1 N N N N N N -9.053  32.007 -34.863 -5.362  0.657  -0.087 H3  SWC 37 
SWC H4  H4  H 0 1 N N N N N N -7.550  31.952 -35.845 -5.614  -1.097 0.077  H4  SWC 38 
SWC H5  H5  H 0 1 N N N N N N -8.029  36.423 -35.254 -1.657  -1.827 -1.640 H5  SWC 39 
SWC H6  H6  H 0 1 N N N N N N -9.740  36.522 -34.714 -1.405  -0.072 -1.804 H6  SWC 40 
SWC H7  H7  H 0 1 N N N N N N -7.434  35.444 -33.014 -0.534  0.019  0.516  H7  SWC 41 
SWC H8  H8  H 0 1 N N N N N N -8.075  37.119 -32.917 -0.786  -1.735 0.680  H8  SWC 42 
SWC H9  H9  H 0 1 N N N N N N -11.488 36.995 -30.073 3.171   -2.465 -1.037 H9  SWC 43 
SWC H10 H10 H 0 1 N N N N N N -11.311 35.222 -30.298 3.423   -0.710 -1.201 H10 SWC 44 
SWC H11 H11 H 0 1 N N N N N N -13.157 36.470 -31.660 4.294   -0.619 1.119  H11 SWC 45 
SWC H12 H12 H 0 1 N N N N N N -12.103 35.294 -32.516 4.042   -2.373 1.283  H12 SWC 46 
SWC H13 H13 H 0 1 N N N N N N -10.968 39.036 -34.514 7.869   -3.108 -0.561 H13 SWC 47 
SWC H14 H14 H 0 1 N N N N N N -13.934 40.413 -36.083 7.600   0.386  0.613  H14 SWC 48 
SWC H15 H15 H 0 1 N N N N N N -14.652 39.029 -35.191 9.257   -0.050 1.095  H15 SWC 49 
SWC H16 H16 H 0 1 N N N N N N -9.538  30.312 -33.188 -7.637  2.141  -1.206 H16 SWC 50 
SWC H17 H17 H 0 1 N N N N N N -13.355 36.792 -35.218 9.930   -2.309 -1.753 H17 SWC 51 
SWC H18 H18 H 0 1 N N N N N N -13.087 36.953 -36.987 10.303  -0.570 -1.812 H18 SWC 52 
SWC H19 H19 H 0 1 N N N N N N -11.684 36.780 -35.879 10.630  -1.501 -0.330 H19 SWC 53 
SWC H20 H20 H 0 1 N N N N N N -10.692 38.852 -36.799 6.655   -0.444 -1.488 H20 SWC 54 
SWC H21 H21 H 0 1 N N N N N N -12.091 39.000 -37.916 8.068   0.012  -2.470 H21 SWC 55 
SWC H22 H22 H 0 1 N N N N N N -11.652 40.370 -36.840 7.505   -1.677 -2.451 H22 SWC 56 
SWC H23 H23 H 0 1 N N N N N N -10.916 30.421 -31.141 -9.831  2.553  -0.168 H23 SWC 57 
SWC H24 H24 H 0 1 N N N N N N -8.208  33.281 -29.470 -10.437 -1.650 0.224  H24 SWC 58 
SWC H25 H25 H 0 1 N N N N N N -6.823  33.162 -31.512 -8.246  -2.063 -0.822 H25 SWC 59 
SWC H26 H26 H 0 1 N N N N N N -7.014  34.181 -34.748 -4.010  -0.638 -2.202 H26 SWC 60 
SWC H27 H27 H 0 1 N N N N N N -9.754  34.715 -32.340 0.819   -1.276 -1.599 H27 SWC 61 
SWC H28 H28 H 0 1 N N N N N N -10.778 37.333 -33.238 5.647   -1.914 -0.996 H28 SWC 62 
SWC H29 H29 H 0 1 N N N N N N -10.268 32.472 -26.981 -11.792 -1.224 1.840  H29 SWC 63 
SWC H30 H30 H 0 1 N N N N N N -13.146 40.474 -33.555 9.099   -1.915 1.783  H30 SWC 64 
SWC H32 H32 H 0 1 N N N N N N -17.539 38.534 -38.338 10.159  4.610  -0.566 H32 SWC 65 
SWC H33 H33 H 0 1 N N N N N N -12.178 32.850 -28.282 -13.586 1.995  1.640  H33 SWC 66 
SWC F1  F1  F 0 1 N Y N N N N -11.094 30.412 -28.478 -12.368 1.543  -0.477 F1  SWC 67 
SWC O1  O10 O 0 1 N Y N N N N -15.314 40.694 -38.950 7.864   3.338  0.578  O1  SWC 68 
SWC H35 H35 H 0 1 N Y N N N N -15.630 41.545 -38.670 7.255   3.437  -0.167 H35 SWC 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SWC O36 P33 SING N N 1  
SWC P33 O32 SING N N 2  
SWC P33 O34 DOUB N N 3  
SWC O32 C27 SING N N 4  
SWC C31 C26 SING N N 5  
SWC C27 C26 SING N N 6  
SWC C30 C26 SING N N 7  
SWC C26 C25 SING N N 8  
SWC O17 C14 DOUB N N 9  
SWC C14 N13 SING N N 10 
SWC C14 C15 SING N N 11 
SWC C12 N13 SING N N 12 
SWC C12 C1  SING N N 13 
SWC C15 C16 SING N N 14 
SWC C25 O29 SING N N 15 
SWC C25 C24 SING N N 16 
SWC C1  C2  SING N N 17 
SWC C24 O28 DOUB N N 18 
SWC C24 N23 SING N N 19 
SWC C16 N18 SING N N 20 
SWC N23 C21 SING N N 21 
SWC C2  C3  DOUB Y N 22 
SWC C2  C7  SING Y N 23 
SWC C3  C4  SING Y N 24 
SWC N18 C19 SING N N 25 
SWC C21 C20 SING N N 26 
SWC C7  C6  DOUB Y N 27 
SWC C19 C20 SING N N 28 
SWC C19 O22 DOUB N N 29 
SWC C4  C5  DOUB Y N 30 
SWC C6  C5  SING Y N 31 
SWC C5  S8  SING N N 32 
SWC O9  S8  SING N N 33 
SWC S8  O10 SING N N 34 
SWC C1  H1  SING N N 35 
SWC C1  H2  SING N N 36 
SWC C12 H3  SING N N 37 
SWC C12 H4  SING N N 38 
SWC C15 H5  SING N N 39 
SWC C15 H6  SING N N 40 
SWC C16 H7  SING N N 41 
SWC C16 H8  SING N N 42 
SWC C20 H9  SING N N 43 
SWC C20 H10 SING N N 44 
SWC C21 H11 SING N N 45 
SWC C21 H12 SING N N 46 
SWC C25 H13 SING N N 47 
SWC C27 H14 SING N N 48 
SWC C27 H15 SING N N 49 
SWC C3  H16 SING N N 50 
SWC C30 H17 SING N N 51 
SWC C30 H18 SING N N 52 
SWC C30 H19 SING N N 53 
SWC C31 H20 SING N N 54 
SWC C31 H21 SING N N 55 
SWC C31 H22 SING N N 56 
SWC C4  H23 SING N N 57 
SWC C6  H24 SING N N 58 
SWC C7  H25 SING N N 59 
SWC N13 H26 SING N N 60 
SWC N18 H27 SING N N 61 
SWC N23 H28 SING N N 62 
SWC O10 H29 SING N N 63 
SWC O29 H30 SING N N 64 
SWC O36 H32 SING N N 65 
SWC O9  H33 SING N N 66 
SWC S8  F1  SING N N 67 
SWC P33 O1  SING N N 68 
SWC O1  H35 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SWC SMILES           ACDLabs              12.01 "OS(F)(O)c1ccc(CCNC(=O)CCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)O)cc1"                                                                                                                                                  
SWC InChI            InChI                1.06  "InChI=1S/C20H33FN3O10PS/c1-20(2,13-34-35(29,30)31)18(27)19(28)24-12-9-17(26)23-11-8-16(25)22-10-7-14-3-5-15(6-4-14)36(21,32)33/h3-6,18,27,32-33H,7-13H2,1-2H3,(H,22,25)(H,23,26)(H,24,28)(H2,29,30,31)/t18-/m0/s1" 
SWC InChIKey         InChI                1.06  AWRGUSCDENOWAW-SFHVURJKSA-N                                                                                                                                                                                         
SWC SMILES_CANONICAL CACTVS               3.385 "CC(C)(CO[P](O)(O)=O)[C@@H](O)C(=O)NCCC(=O)NCCC(=O)NCCc1ccc(cc1)[S](O)(O)F"                                                                                                                                         
SWC SMILES           CACTVS               3.385 "CC(C)(CO[P](O)(O)=O)[CH](O)C(=O)NCCC(=O)NCCC(=O)NCCc1ccc(cc1)[S](O)(O)F"                                                                                                                                           
SWC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(COP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCC(=O)NCCc1ccc(cc1)S(O)(O)F)O"                                                                                                                                              
SWC SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(COP(=O)(O)O)C(C(=O)NCCC(=O)NCCC(=O)NCCc1ccc(cc1)S(O)(O)F)O"                                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SWC "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl-N-(2-{4-[fluoro(dihydroxy)-lambda~4~-sulfanyl]phenyl}ethyl)-beta-alaninamide"                                                                    
SWC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{R})-4-[[3-[[3-[2-[4-[fluoranyl-bis(oxidanyl)-$l^{4}-sulfanyl]phenyl]ethylamino]-3-oxidanylidene-propyl]amino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SWC "Create component" 2022-07-12 RCSB 
SWC "Initial release"  2023-07-12 RCSB 
SWC "Modify PCM"       2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 SWC SER None Crosslinker "Amino-acid side chain" "Any position" P33 OG ? ? 
2 SWC TYR None Crosslinker "Amino-acid side chain" "Any position" S8  OH ? ? 
# 
