data_YKB
# 
_chem_comp.id                                    YKB 
_chem_comp.name                                  "N-[4-(3H-IMIDAZO[4,5-C]PYRIDIN-2-YL)-9H-FLUOREN-9-YL]-SUCCINAMIDE" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H19 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-05-26 
_chem_comp.pdbx_modified_date                    2011-10-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        397.429 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YKB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2YKB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YKB C1   C1   C 0 1 Y N N 8.220  35.126 -23.423 0.892  -2.932 -0.737 C1   YKB 1  
YKB C2   C2   C 0 1 Y N N 7.012  35.757 -22.860 -0.434 -3.140 -1.071 C2   YKB 2  
YKB C3   C3   C 0 1 Y N N 5.864  34.958 -23.132 -1.298 -2.065 -1.184 C3   YKB 3  
YKB C4   C4   C 0 1 Y N N 8.258  33.925 -24.209 1.361  -1.654 -0.514 C4   YKB 4  
YKB C5   C5   C 0 1 Y N N 6.996  33.226 -24.424 0.494  -0.564 -0.625 C5   YKB 5  
YKB C6   C6   C 0 1 Y N N 5.849  33.779 -23.861 -0.839 -0.784 -0.963 C6   YKB 6  
YKB C7   C7   C 0 1 N N R 4.647  32.974 -24.127 -1.523 0.561  -1.009 C7   YKB 7  
YKB C8   C8   C 0 1 Y N N 6.569  31.970 -25.150 0.725  0.889  -0.445 C8   YKB 8  
YKB C9   C9   C 0 1 Y N N 5.202  31.806 -24.992 -0.463 1.579  -0.666 C9   YKB 9  
YKB C10  C10  C 0 1 Y N N 4.406  30.767 -25.501 -0.501 2.953  -0.556 C10  YKB 10 
YKB C11  C11  C 0 1 Y N N 5.052  29.725 -26.295 0.642  3.661  -0.222 C11  YKB 11 
YKB C12  C12  C 0 1 Y N N 6.500  29.916 -26.480 1.830  2.997  0.003  C12  YKB 12 
YKB C13  C13  C 0 1 Y N N 7.251  30.976 -25.923 1.886  1.609  -0.106 C13  YKB 13 
YKB C14  C14  C 0 1 Y N N 8.752  30.972 -26.189 3.157  0.896  0.136  C14  YKB 14 
YKB N15  N15  N 0 1 Y N N 9.675  31.070 -25.280 3.261  -0.320 0.621  N15  YKB 15 
YKB N16  N16  N 0 1 Y N N 9.261  30.809 -27.513 4.404  1.401  -0.118 N16  YKB 16 
YKB C17  C17  C 0 1 Y N N 10.536 30.803 -27.464 5.316  0.430  0.243  C17  YKB 17 
YKB C18  C18  C 0 1 Y N N 10.810 30.953 -26.073 4.558  -0.663 0.713  C18  YKB 18 
YKB C19  C19  C 0 1 Y N N 12.209 30.984 -25.603 5.245  -1.804 1.147  C19  YKB 19 
YKB C20  C20  C 0 1 Y N N 13.158 30.832 -26.494 6.610  -1.809 1.101  C20  YKB 20 
YKB N21  N21  N 0 1 Y N N 12.853 30.703 -27.862 7.290  -0.765 0.658  N21  YKB 21 
YKB C22  C22  C 0 1 Y N N 11.609 30.697 -28.374 6.697  0.333  0.229  C22  YKB 22 
YKB N23  N23  N 0 1 N N N 3.468  33.442 -24.757 -2.606 0.610  -0.023 N23  YKB 23 
YKB C24  C24  C 0 1 N N N 2.252  33.673 -24.111 -3.834 0.159  -0.348 C24  YKB 24 
YKB C25  C25  C 0 1 N N N 1.050  34.175 -24.940 -4.948 0.209  0.665  C25  YKB 25 
YKB O26  O26  O 0 1 N N N 2.163  33.494 -22.889 -4.042 -0.288 -1.457 O26  YKB 26 
YKB C27  C27  C 0 1 N N N -0.140 34.614 -24.148 -6.226 -0.359 0.046  C27  YKB 27 
YKB C28  C28  C 0 1 N N N -1.425 34.499 -24.833 -7.340 -0.309 1.060  C28  YKB 28 
YKB O29  O29  O 0 1 N N N -1.540 34.723 -26.160 -7.132 0.137  2.168  O29  YKB 29 
YKB N30  N30  N 0 1 N N N -2.320 34.043 -24.124 -8.568 -0.760 0.735  N30  YKB 30 
YKB H1   H1   H 0 1 N N N 9.164  35.612 -23.226 1.562  -3.774 -0.645 H1   YKB 31 
YKB H2   H2   H 0 1 N N N 6.999  36.691 -22.319 -0.796 -4.142 -1.244 H2   YKB 32 
YKB H4   H4   H 0 1 N N N 9.184  33.554 -24.624 2.397  -1.497 -0.252 H4   YKB 33 
YKB H3   H3   H 0 1 N N N 4.921  35.302 -22.734 -2.333 -2.229 -1.446 H3   YKB 34 
YKB H7   H7   H 0 1 N N N 4.228  32.818 -23.122 -1.915 0.748  -2.008 H7   YKB 35 
YKB H23  H23  H 0 1 N N N 3.510  33.621 -25.740 -2.439 0.967  0.863  H23  YKB 36 
YKB H10  H10  H 0 1 N N N 3.343  30.739 -25.310 -1.427 3.480  -0.731 H10  YKB 37 
YKB H11  H11  H 0 1 N N N 4.513  28.886 -26.711 0.603  4.737  -0.139 H11  YKB 38 
YKB H12  H12  H 0 1 N N N 7.027  29.193 -27.086 2.718  3.554  0.263  H12  YKB 39 
YKB H16  H16  H 0 1 N N N 8.709  30.715 -28.342 4.608  2.276  -0.483 H16  YKB 40 
YKB H22  H22  H 0 1 N N N 11.439 30.614 -29.437 7.292  1.160  -0.131 H22  YKB 41 
YKB H19  H19  H 0 1 N N N 12.443 31.127 -24.558 4.705  -2.664 1.513  H19  YKB 42 
YKB H20  H20  H 0 1 N N N 14.189 30.805 -26.174 7.146  -2.685 1.434  H20  YKB 43 
YKB H251 H251 H 0 0 N N N 1.392  35.038 -25.529 -4.672 -0.383 1.538  H251 YKB 44 
YKB H252 H252 H 0 0 N N N 0.728  33.348 -25.590 -5.118 1.242  0.967  H252 YKB 45 
YKB H271 H271 H 0 0 N N N -0.188 33.987 -23.246 -6.502 0.233  -0.826 H271 YKB 46 
YKB H272 H272 H 0 0 N N N 0.005  35.674 -23.891 -6.056 -1.393 -0.255 H272 YKB 47 
YKB H301 H301 H 0 0 N N N -3.206 33.811 -24.525 -8.735 -1.117 -0.152 H301 YKB 48 
YKB H302 H302 H 0 0 N N N -2.162 33.904 -23.146 -9.285 -0.728 1.387  H302 YKB 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YKB C1  C2   SING Y N 1  
YKB C1  C4   DOUB Y N 2  
YKB C2  C3   DOUB Y N 3  
YKB C3  C6   SING Y N 4  
YKB C4  C5   SING Y N 5  
YKB C5  C6   DOUB Y N 6  
YKB C5  C8   SING Y N 7  
YKB C6  C7   SING N N 8  
YKB C7  C9   SING N N 9  
YKB C7  N23  SING N N 10 
YKB C8  C9   SING Y N 11 
YKB C8  C13  DOUB Y N 12 
YKB C9  C10  DOUB Y N 13 
YKB C10 C11  SING Y N 14 
YKB C11 C12  DOUB Y N 15 
YKB C12 C13  SING Y N 16 
YKB C13 C14  SING Y N 17 
YKB C14 N15  DOUB Y N 18 
YKB C14 N16  SING Y N 19 
YKB N15 C18  SING Y N 20 
YKB N16 C17  SING Y N 21 
YKB C17 C18  SING Y N 22 
YKB C17 C22  DOUB Y N 23 
YKB C18 C19  DOUB Y N 24 
YKB C19 C20  SING Y N 25 
YKB C20 N21  DOUB Y N 26 
YKB N21 C22  SING Y N 27 
YKB N23 C24  SING N N 28 
YKB C24 C25  SING N N 29 
YKB C24 O26  DOUB N N 30 
YKB C25 C27  SING N N 31 
YKB C27 C28  SING N N 32 
YKB C28 O29  DOUB N N 33 
YKB C28 N30  SING N N 34 
YKB C1  H1   SING N N 35 
YKB C2  H2   SING N N 36 
YKB C4  H4   SING N N 37 
YKB C3  H3   SING N N 38 
YKB C7  H7   SING N N 39 
YKB N23 H23  SING N N 40 
YKB C10 H10  SING N N 41 
YKB C11 H11  SING N N 42 
YKB C12 H12  SING N N 43 
YKB N16 H16  SING N N 44 
YKB C22 H22  SING N N 45 
YKB C19 H19  SING N N 46 
YKB C20 H20  SING N N 47 
YKB C25 H251 SING N N 48 
YKB C25 H252 SING N N 49 
YKB C27 H271 SING N N 50 
YKB C27 H272 SING N N 51 
YKB N30 H301 SING N N 52 
YKB N30 H302 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YKB SMILES           ACDLabs              12.01 "O=C(N)CCC(=O)NC5c1ccccc1c4c5cccc4c3nc2ccncc2n3"                                                                                                                                    
YKB SMILES_CANONICAL CACTVS               3.370 "NC(=O)CCC(=O)N[C@@H]1c2ccccc2c3c1cccc3c4[nH]c5cnccc5n4"                                                                                                                            
YKB SMILES           CACTVS               3.370 "NC(=O)CCC(=O)N[CH]1c2ccccc2c3c1cccc3c4[nH]c5cnccc5n4"                                                                                                                              
YKB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "c1ccc2c(c1)-c3c(cccc3[C@@H]2NC(=O)CCC(=O)N)c4[nH]c5cnccc5n4"                                                                                                                       
YKB SMILES           "OpenEye OEToolkits" 1.7.2 "c1ccc2c(c1)-c3c(cccc3C2NC(=O)CCC(=O)N)c4[nH]c5cnccc5n4"                                                                                                                            
YKB InChI            InChI                1.03  "InChI=1S/C23H19N5O2/c24-19(29)8-9-20(30)28-22-14-5-2-1-4-13(14)21-15(22)6-3-7-16(21)23-26-17-10-11-25-12-18(17)27-23/h1-7,10-12,22H,8-9H2,(H2,24,29)(H,26,27)(H,28,30)/t22-/m1/s1" 
YKB InChIKey         InChI                1.03  ROTVJYWUPWSGIX-JOCHJYFZSA-N                                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YKB "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(9R)-4-(3H-imidazo[4,5-c]pyridin-2-yl)-9H-fluoren-9-yl]butanediamide"  
YKB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "N'-[(9R)-4-(3H-imidazo[4,5-c]pyridin-2-yl)-9H-fluoren-9-yl]butanediamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YKB "Create component"     2011-05-26 EBI  
YKB "Modify aromatic_flag" 2011-06-04 RCSB 
YKB "Modify descriptor"    2011-06-04 RCSB 
# 
