data_VKB
#

_chem_comp.id                                   VKB
_chem_comp.name                                 "4-[5-azanyl-6-(phenylmethyl)pyrazin-2-yl]phenol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H15 N3 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-24
_chem_comp.pdbx_modified_date                   2022-05-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       277.321
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VKB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7OMO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VKB  C1   C1   C  0  1  Y  N  N  42.119  -23.753   9.983  -0.822   2.127   0.633  C1   VKB   1  
VKB  N1   N1   N  0  1  Y  N  N  43.194  -24.032  10.720   0.363   2.710   0.600  N1   VKB   2  
VKB  C2   C2   C  0  1  Y  N  N  40.834  -24.141  10.363  -1.024   0.922  -0.036  C2   VKB   3  
VKB  N    N2   N  0  1  N  N  N  44.103  -25.064  12.576   2.608   2.760  -0.105  N    VKB   4  
VKB  C    C3   C  0  1  Y  N  N  43.023  -24.713  11.871   1.361   2.147  -0.071  C    VKB   5  
VKB  O    O1   O  0  1  N  N  N  36.346  -23.233   7.061  -6.054  -1.562   0.116  O    VKB   6  
VKB  C10  C4   C  0  1  N  N  N  41.426  -25.814  13.568   2.293   0.303  -1.501  C10  VKB   7  
VKB  C11  C5   C  0  1  Y  N  N  42.028  -25.156  14.796   3.054  -0.622  -0.586  C11  VKB   8  
VKB  C12  C6   C  0  1  Y  N  N  42.629  -25.921  15.787   4.119  -0.142   0.152  C12  VKB   9  
VKB  C13  C7   C  0  1  Y  N  N  43.143  -25.327  16.928   4.817  -0.990   0.991  C13  VKB  10  
VKB  C14  C8   C  0  1  Y  N  N  43.069  -23.958  17.091   4.450  -2.319   1.092  C14  VKB  11  
VKB  C15  C9   C  0  1  Y  N  N  42.482  -23.186  16.112   3.384  -2.799   0.354  C15  VKB  12  
VKB  C16  C10  C  0  1  Y  N  N  41.966  -23.779  14.971   2.683  -1.950  -0.481  C16  VKB  13  
VKB  C3   C11  C  0  1  Y  N  N  39.645  -23.887   9.513  -2.354   0.268   0.001  C3   VKB  14  
VKB  C4   C12  C  0  1  Y  N  N  39.699  -22.977   8.461  -2.530  -0.990  -0.574  C4   VKB  15  
VKB  C5   C13  C  0  1  Y  N  N  38.604  -22.751   7.648  -3.766  -1.599  -0.534  C5   VKB  16  
VKB  C6   C14  C  0  1  Y  N  N  37.422  -23.439   7.875  -4.836  -0.960   0.079  C6   VKB  17  
VKB  C7   C15  C  0  1  Y  N  N  37.343  -24.345   8.923  -4.665   0.293   0.652  C7   VKB  18  
VKB  C8   C16  C  0  1  Y  N  N  38.446  -24.563   9.729  -3.430   0.906   0.615  C8   VKB  19  
VKB  C9   C17  C  0  1  Y  N  N  41.712  -25.083  12.278   1.159   0.941  -0.740  C9   VKB  20  
VKB  N2   N3   N  0  1  Y  N  N  40.639  -24.800  11.520  -0.023   0.359  -0.708  N2   VKB  21  
VKB  H1   H1   H  0  1  N  N  N  42.247  -23.208   9.060  -1.632   2.583   1.183  H1   VKB  22  
VKB  H2   H2   H  0  1  N  N  N  44.926  -24.744  12.107   2.749   3.599   0.360  H2   VKB  23  
VKB  H3   H3   H  0  1  N  N  N  44.056  -24.651  13.485   3.337   2.349  -0.596  H3   VKB  24  
VKB  H4   H4   H  0  1  N  N  N  35.622  -23.776   7.349  -6.194  -2.117   0.896  H4   VKB  25  
VKB  H5   H5   H  0  1  N  N  N  40.335  -25.865  13.702   2.963   1.078  -1.872  H5   VKB  26  
VKB  H6   H6   H  0  1  N  N  N  41.833  -26.832  13.486   1.893  -0.265  -2.341  H6   VKB  27  
VKB  H7   H7   H  0  1  N  N  N  42.696  -26.992  15.667   4.406   0.896   0.074  H7   VKB  28  
VKB  H8   H8   H  0  1  N  N  N  43.603  -25.936  17.692   5.650  -0.615   1.568  H8   VKB  29  
VKB  H9   H9   H  0  1  N  N  N  43.469  -23.495  17.981   4.995  -2.982   1.747  H9   VKB  30  
VKB  H10  H10  H  0  1  N  N  N  42.424  -22.115  16.235   3.097  -3.838   0.432  H10  VKB  31  
VKB  H11  H11  H  0  1  N  N  N  41.510  -23.164  14.209   1.848  -2.324  -1.055  H11  VKB  32  
VKB  H12  H12  H  0  1  N  N  N  40.615  -22.436   8.276  -1.698  -1.488  -1.051  H12  VKB  33  
VKB  H13  H13  H  0  1  N  N  N  38.669  -22.040   6.838  -3.903  -2.573  -0.979  H13  VKB  34  
VKB  H14  H14  H  0  1  N  N  N  36.423  -24.879   9.109  -5.499   0.788   1.127  H14  VKB  35  
VKB  H15  H15  H  0  1  N  N  N  38.376  -25.271  10.542  -3.296   1.879   1.066  H15  VKB  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VKB  O    C6   SING  N  N   1  
VKB  C5   C6   DOUB  Y  N   2  
VKB  C5   C4   SING  Y  N   3  
VKB  C6   C7   SING  Y  N   4  
VKB  C4   C3   DOUB  Y  N   5  
VKB  C7   C8   DOUB  Y  N   6  
VKB  C3   C8   SING  Y  N   7  
VKB  C3   C2   SING  N  N   8  
VKB  C1   C2   DOUB  Y  N   9  
VKB  C1   N1   SING  Y  N  10  
VKB  C2   N2   SING  Y  N  11  
VKB  N1   C    DOUB  Y  N  12  
VKB  N2   C9   DOUB  Y  N  13  
VKB  C    C9   SING  Y  N  14  
VKB  C    N    SING  N  N  15  
VKB  C9   C10  SING  N  N  16  
VKB  C10  C11  SING  N  N  17  
VKB  C11  C16  DOUB  Y  N  18  
VKB  C11  C12  SING  Y  N  19  
VKB  C16  C15  SING  Y  N  20  
VKB  C12  C13  DOUB  Y  N  21  
VKB  C15  C14  DOUB  Y  N  22  
VKB  C13  C14  SING  Y  N  23  
VKB  C1   H1   SING  N  N  24  
VKB  N    H2   SING  N  N  25  
VKB  N    H3   SING  N  N  26  
VKB  O    H4   SING  N  N  27  
VKB  C10  H5   SING  N  N  28  
VKB  C10  H6   SING  N  N  29  
VKB  C12  H7   SING  N  N  30  
VKB  C13  H8   SING  N  N  31  
VKB  C14  H9   SING  N  N  32  
VKB  C15  H10  SING  N  N  33  
VKB  C16  H11  SING  N  N  34  
VKB  C4   H12  SING  N  N  35  
VKB  C5   H13  SING  N  N  36  
VKB  C7   H14  SING  N  N  37  
VKB  C8   H15  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VKB  InChI             InChI                 1.03   "InChI=1S/C17H15N3O/c18-17-15(10-12-4-2-1-3-5-12)20-16(11-19-17)13-6-8-14(21)9-7-13/h1-9,11,21H,10H2,(H2,18,19)"  
VKB  InChIKey          InChI                 1.03   BWNPYAKFDUFNND-UHFFFAOYSA-N  
VKB  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncc(nc1Cc2ccccc2)c3ccc(O)cc3"  
VKB  SMILES            CACTVS                3.385  "Nc1ncc(nc1Cc2ccccc2)c3ccc(O)cc3"  
VKB  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)Cc2c(ncc(n2)c3ccc(cc3)O)N"  
VKB  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)Cc2c(ncc(n2)c3ccc(cc3)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          VKB
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "4-[5-azanyl-6-(phenylmethyl)pyrazin-2-yl]phenol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VKB  "Create component"  2021-05-24  PDBE  
VKB  "Initial release"   2022-06-01  RCSB  
##
