data_GKB
# 
_chem_comp.id                                    GKB 
_chem_comp.name                                  "(2~{R})-~{N}-[3-(4-methylimidazol-1-yl)-5-(trifluoromethyl)phenyl]-2-(pyrimidin-5-ylamino)-2,3-dihydro-1~{H}-indene-5-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H21 F3 N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-09-19 
_chem_comp.pdbx_modified_date                    2019-01-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        478.469 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GKB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6HP9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GKB N1  N1  N 0 1 Y N N 33.400 7.194  -42.053 -6.035 1.610  -0.107 N1  GKB 1  
GKB N3  N2  N 0 1 N N N 39.985 -1.943 -36.757 6.988  -0.745 0.080  N3  GKB 2  
GKB C4  C1  C 0 1 N N N 32.320 6.150  -37.342 -4.749 -3.136 0.002  C4  GKB 3  
GKB C5  C2  C 0 1 Y N N 32.872 6.659  -39.729 -5.367 -0.713 -0.052 C5  GKB 4  
GKB C6  C3  C 0 1 Y N N 33.666 6.457  -40.857 -5.034 0.634  0.008  C6  GKB 5  
GKB C7  C4  C 0 1 Y N N 34.294 7.408  -43.084 -5.856 2.969  -0.068 C7  GKB 6  
GKB C8  C5  C 0 1 Y N N 33.632 8.072  -44.069 -7.073 3.526  -0.216 C8  GKB 7  
GKB C10 C6  C 0 1 Y N N 32.221 7.753  -42.440 -7.363 1.388  -0.285 C10 GKB 8  
GKB C13 C7  C 0 1 Y N N 37.087 0.471  -38.713 2.032  -0.758 -0.361 C13 GKB 9  
GKB C15 C8  C 0 1 Y N N 39.421 0.095  -39.136 3.664  0.627  0.715  C15 GKB 10 
GKB C17 C9  C 0 1 N N R 39.753 -2.070 -38.189 5.744  -0.082 -0.320 C17 GKB 11 
GKB C20 C10 C 0 1 Y N N 38.876 -4.716 -33.998 10.558 1.153  -0.419 C20 GKB 12 
GKB C21 C11 C 0 1 Y N N 39.771 -2.702 -34.474 9.406  -0.706 0.283  C21 GKB 13 
GKB C22 C12 C 0 1 N N N 38.262 -1.852 -38.446 4.627  -1.118 -0.571 C22 GKB 14 
GKB C24 C13 C 0 1 Y N N 38.443 2.251  -39.577 1.330  1.093  1.016  C24 GKB 15 
GKB N   N3  N 0 1 N N N 35.864 3.704  -39.796 -1.388 0.422  0.462  N   GKB 16 
GKB C   C14 C 0 1 N N N 35.999 2.664  -38.940 -0.404 -0.323 -0.079 C   GKB 17 
GKB O   O1  O 0 1 N N N 35.171 2.405  -38.071 -0.678 -1.267 -0.793 O   GKB 18 
GKB C1  C15 C 0 1 Y N N 34.931 4.767  -39.705 -2.724 0.044  0.293  C1  GKB 19 
GKB C11 C16 C 0 1 Y N N 34.700 5.525  -40.845 -3.712 1.013  0.180  C11 GKB 20 
GKB C12 C17 C 0 1 Y N N 37.205 1.797  -39.123 1.010  0.009  0.197  C12 GKB 21 
GKB C14 C18 C 0 1 Y N N 38.184 -0.378 -38.731 3.353  -0.449 -0.099 C14 GKB 22 
GKB C16 C19 C 0 1 N N N 40.463 -0.983 -39.000 5.167  0.752  0.843  C16 GKB 23 
GKB C18 C20 C 0 1 Y N N 39.594 -2.909 -35.838 8.212  -0.094 -0.091 C18 GKB 24 
GKB C19 C21 C 0 1 Y N N 39.031 -4.137 -36.171 8.272  1.180  -0.651 C19 GKB 25 
GKB C2  C22 C 0 1 Y N N 34.145 4.967  -38.571 -3.063 -1.302 0.228  C2  GKB 26 
GKB C23 C23 C 0 1 Y N N 39.546 1.411  -39.574 2.651  1.395  1.267  C23 GKB 27 
GKB C3  C24 C 0 1 Y N N 33.122 5.913  -38.584 -4.383 -1.676 0.061  C3  GKB 28 
GKB C9  C25 C 0 1 N N N 34.127 8.495  -45.421 -7.372 5.003  -0.230 C9  GKB 29 
GKB F   F1  F 0 1 N N N 31.653 7.293  -37.358 -3.844 -3.875 0.772  F   GKB 30 
GKB F1  F2  F 0 1 N N N 33.089 6.170  -36.244 -6.042 -3.314 0.506  F1  GKB 31 
GKB F2  F3  F 0 1 N N N 31.393 5.226  -37.132 -4.701 -3.576 -1.325 F2  GKB 32 
GKB N2  N4  N 0 1 Y N N 32.290 8.297  -43.634 -7.973 2.540  -0.343 N2  GKB 33 
GKB N4  N5  N 0 1 Y N N 38.665 -5.049 -35.268 9.451  1.764  -0.791 N4  GKB 34 
GKB N5  N6  N 0 1 Y N N 39.413 -3.589 -33.545 10.544 -0.057 0.104  N5  GKB 35 
GKB H1  H1  H 0 1 N N N 40.974 -1.842 -36.646 6.961  -1.635 0.465  H1  GKB 36 
GKB H2  H2  H 0 1 N N N 32.073 7.386  -39.745 -6.398 -1.009 -0.182 H2  GKB 37 
GKB H3  H3  H 0 1 N N N 35.330 7.103  -43.104 -4.919 3.491  0.058  H3  GKB 38 
GKB H4  H4  H 0 1 N N N 31.328 7.750  -41.833 -7.835 0.420  -0.362 H4  GKB 39 
GKB H5  H5  H 0 1 N N N 36.130 0.099  -38.377 1.790  -1.598 -0.996 H5  GKB 40 
GKB H6  H6  H 0 1 N N N 40.055 -3.064 -38.550 5.903  0.537  -1.203 H6  GKB 41 
GKB H7  H7  H 0 1 N N N 38.578 -5.441 -33.254 11.504 1.656  -0.552 H7  GKB 42 
GKB H8  H8  H 0 1 N N N 40.222 -1.775 -34.151 9.402  -1.697 0.713  H8  GKB 43 
GKB H9  H9  H 0 1 N N N 37.665 -2.116 -37.561 4.560  -1.352 -1.633 H9  GKB 44 
GKB H10 H10 H 0 1 N N N 37.919 -2.441 -39.309 4.816  -2.024 0.004  H10 GKB 45 
GKB H11 H11 H 0 1 N N N 38.543 3.265  -39.934 0.545  1.696  1.449  H11 GKB 46 
GKB H12 H12 H 0 1 N N N 36.489 3.724  -40.576 -1.171 1.220  0.968  H12 GKB 47 
GKB H13 H13 H 0 1 N N N 35.320 5.392  -41.719 -3.450 2.060  0.226  H13 GKB 48 
GKB H14 H14 H 0 1 N N N 40.765 -1.364 -39.987 5.470  1.795  0.747  H14 GKB 49 
GKB H15 H15 H 0 1 N N N 41.348 -0.608 -38.465 5.500  0.348  1.799  H15 GKB 50 
GKB H16 H16 H 0 1 N N N 38.882 -4.364 -37.216 7.370  1.685  -0.962 H16 GKB 51 
GKB H17 H17 H 0 1 N N N 34.330 4.387  -37.679 -2.295 -2.056 0.307  H17 GKB 52 
GKB H18 H18 H 0 1 N N N 40.504 1.778  -39.912 2.898  2.234  1.901  H18 GKB 53 
GKB H19 H19 H 0 1 N N N 33.310 8.980  -45.976 -7.570 5.344  0.786  H19 GKB 54 
GKB H20 H20 H 0 1 N N N 34.960 9.203  -45.301 -6.516 5.544  -0.634 H20 GKB 55 
GKB H21 H21 H 0 1 N N N 34.474 7.612  -45.977 -8.246 5.191  -0.853 H21 GKB 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GKB C9  C8  SING N N 1  
GKB C8  N2  SING Y N 2  
GKB C8  C7  DOUB Y N 3  
GKB N2  C10 DOUB Y N 4  
GKB C7  N1  SING Y N 5  
GKB C10 N1  SING Y N 6  
GKB N1  C6  SING N N 7  
GKB C6  C11 DOUB Y N 8  
GKB C6  C5  SING Y N 9  
GKB C11 C1  SING Y N 10 
GKB N   C1  SING N N 11 
GKB N   C   SING N N 12 
GKB C5  C3  DOUB Y N 13 
GKB C1  C2  DOUB Y N 14 
GKB C24 C23 DOUB Y N 15 
GKB C24 C12 SING Y N 16 
GKB C23 C15 SING Y N 17 
GKB C15 C16 SING N N 18 
GKB C15 C14 DOUB Y N 19 
GKB C12 C   SING N N 20 
GKB C12 C13 DOUB Y N 21 
GKB C16 C17 SING N N 22 
GKB C   O   DOUB N N 23 
GKB C14 C13 SING Y N 24 
GKB C14 C22 SING N N 25 
GKB C3  C2  SING Y N 26 
GKB C3  C4  SING N N 27 
GKB C22 C17 SING N N 28 
GKB C17 N3  SING N N 29 
GKB F   C4  SING N N 30 
GKB C4  F2  SING N N 31 
GKB C4  F1  SING N N 32 
GKB N3  C18 SING N N 33 
GKB C19 C18 DOUB Y N 34 
GKB C19 N4  SING Y N 35 
GKB C18 C21 SING Y N 36 
GKB N4  C20 DOUB Y N 37 
GKB C21 N5  DOUB Y N 38 
GKB C20 N5  SING Y N 39 
GKB N3  H1  SING N N 40 
GKB C5  H2  SING N N 41 
GKB C7  H3  SING N N 42 
GKB C10 H4  SING N N 43 
GKB C13 H5  SING N N 44 
GKB C17 H6  SING N N 45 
GKB C20 H7  SING N N 46 
GKB C21 H8  SING N N 47 
GKB C22 H9  SING N N 48 
GKB C22 H10 SING N N 49 
GKB C24 H11 SING N N 50 
GKB N   H12 SING N N 51 
GKB C11 H13 SING N N 52 
GKB C16 H14 SING N N 53 
GKB C16 H15 SING N N 54 
GKB C19 H16 SING N N 55 
GKB C2  H17 SING N N 56 
GKB C23 H18 SING N N 57 
GKB C9  H19 SING N N 58 
GKB C9  H20 SING N N 59 
GKB C9  H21 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GKB InChI            InChI                1.03  "InChI=1S/C25H21F3N6O/c1-15-12-34(14-31-15)23-8-19(25(26,27)28)7-21(9-23)33-24(35)17-3-2-16-5-20(6-18(16)4-17)32-22-10-29-13-30-11-22/h2-4,7-14,20,32H,5-6H2,1H3,(H,33,35)/t20-/m1/s1" 
GKB InChIKey         InChI                1.03  XFLAQLCDMJRPFH-HXUWFJFHSA-N                                                                                                                                                            
GKB SMILES_CANONICAL CACTVS               3.385 "Cc1cn(cn1)c2cc(NC(=O)c3ccc4C[C@H](Cc4c3)Nc5cncnc5)cc(c2)C(F)(F)F"                                                                                                                     
GKB SMILES           CACTVS               3.385 "Cc1cn(cn1)c2cc(NC(=O)c3ccc4C[CH](Cc4c3)Nc5cncnc5)cc(c2)C(F)(F)F"                                                                                                                      
GKB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cn(cn1)c2cc(cc(c2)NC(=O)c3ccc4c(c3)C[C@@H](C4)Nc5cncnc5)C(F)(F)F"                                                                                                                  
GKB SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1cn(cn1)c2cc(cc(c2)NC(=O)c3ccc4c(c3)CC(C4)Nc5cncnc5)C(F)(F)F"                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GKB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R})-~{N}-[3-(4-methylimidazol-1-yl)-5-(trifluoromethyl)phenyl]-2-(pyrimidin-5-ylamino)-2,3-dihydro-1~{H}-indene-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GKB "Create component" 2018-09-19 EBI  
GKB "Initial release"  2019-01-30 RCSB 
# 
