data_BKB
# 
_chem_comp.id                                    BKB 
_chem_comp.name                                  "5-{4-[3-chloro-5-(trifluoromethyl)phenyl]piperazine-1-sulfonyl}-N-[5-(hydroxyamino)-5-oxopentyl]-2,3-dihydro-1H-indole-1-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H29 Cl F3 N5 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-11-17 
_chem_comp.pdbx_modified_date                    2023-04-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        604.041 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     BKB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7SS6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
BKB C13  C1  C  0 1 Y N N 35.550 11.448 2.463  -1.154  -1.925 0.766  C13  BKB 1  
BKB C15  C2  C  0 1 Y N N 33.532 10.324 1.815  -2.976  -1.237 -0.647 C15  BKB 2  
BKB C17  C3  C  0 1 Y N N 35.611 9.556  0.886  -0.863  -1.857 -1.608 C17  BKB 3  
BKB C21  C4  C  0 1 N N N 31.035 10.813 2.277  -5.253  -0.533 -0.146 C21  BKB 4  
BKB C24  C5  C  0 1 N N N 28.570 11.201 2.638  -7.528  0.199  0.334  C24  BKB 5  
BKB C26  C6  C  0 1 N N N 27.182 13.261 2.042  -9.891  0.983  0.540  C26  BKB 6  
BKB C28  C7  C  0 1 N N N 27.827 15.654 1.603  -12.237 1.762  0.732  C28  BKB 7  
BKB C01  C8  C  0 1 Y N N 39.385 7.868  7.298  6.571   0.162  1.640  C01  BKB 8  
BKB C02  C9  C  0 1 Y N N 39.120 7.271  6.094  5.896   0.573  0.498  C02  BKB 9  
BKB C04  C10 C  0 1 N N N 39.251 7.574  3.598  4.048   -0.539 1.461  C04  BKB 10 
BKB C05  C11 C  0 1 N N N 38.320 8.313  2.648  2.534   -0.726 1.320  C05  BKB 11 
BKB C07  C12 C  0 1 N N N 38.477 10.261 4.036  2.842   -0.655 -1.185 C07  BKB 12 
BKB C08  C13 C  0 1 N N N 39.331 9.526  5.059  4.344   -0.470 -0.945 C08  BKB 13 
BKB C12  C14 C  0 1 Y N N 36.221 10.559 1.625  -0.354  -2.107 -0.347 C12  BKB 14 
BKB C14  C15 C  0 1 Y N N 34.169 11.341 2.550  -2.457  -1.496 0.622  C14  BKB 15 
BKB C16  C16 C  0 1 Y N N 34.224 9.445  0.978  -2.164  -1.416 -1.756 C16  BKB 16 
BKB C18  C17 C  0 1 N N N 33.254 8.475  0.307  -2.959  -1.073 -2.996 C18  BKB 17 
BKB C19  C18 C  0 1 N N N 31.903 8.796  0.907  -4.339  -0.649 -2.465 C19  BKB 18 
BKB C25  C19 C  0 1 N N N 28.377 12.371 1.625  -8.756  0.680  -0.441 C25  BKB 19 
BKB C27  C20 C  0 1 N N N 27.020 14.457 1.080  -11.119 1.464  -0.234 C27  BKB 20 
BKB C32  C21 C  0 1 Y N N 38.953 5.898  5.953  6.562   1.313  -0.471 C32  BKB 21 
BKB C33  C22 C  0 1 Y N N 39.044 5.117  7.082  7.893   1.639  -0.296 C33  BKB 22 
BKB C34  C23 C  0 1 Y N N 39.289 5.684  8.316  8.563   1.229  0.842  C34  BKB 23 
BKB C35  C24 C  0 1 Y N N 39.452 7.069  8.424  7.903   0.491  1.809  C35  BKB 24 
BKB C37  C25 C  0 1 N N N 38.846 3.611  6.925  8.616   2.442  -1.347 C37  BKB 25 
BKB F38  F1  F  0 1 N N N 37.638 3.415  6.342  8.061   2.172  -2.602 F38  BKB 26 
BKB F39  F2  F  0 1 N N N 38.893 3.040  8.155  8.486   3.806  -1.062 F39  BKB 27 
BKB F40  F3  F  0 1 N N N 39.807 3.096  6.128  9.970   2.093  -1.350 F40  BKB 28 
BKB N03  N1  N  0 1 N N N 39.034 8.100  4.928  4.550   0.242  0.323  N03  BKB 29 
BKB N06  N2  N  0 1 N N N 38.684 9.731  2.704  2.256   -1.306 -0.003 N06  BKB 30 
BKB N20  N3  N  0 1 N N N 32.094 10.001 1.706  -4.254  -0.799 -1.010 N20  BKB 31 
BKB N23  N4  N  0 1 N N N 29.646 10.381 2.076  -6.441  -0.091 -0.605 N23  BKB 32 
BKB N30  N5  N  0 1 N N N 27.286 17.004 1.546  -13.425 2.204  0.273  N30  BKB 33 
BKB O10  O1  O  0 1 N N N 38.402 10.230 0.157  1.370   -3.333 1.089  O10  BKB 34 
BKB O11  O2  O  0 1 N N N 38.423 12.066 1.724  1.674   -3.262 -1.391 O11  BKB 35 
BKB O22  O3  O  0 1 N N N 31.309 11.772 2.910  -5.083  -0.690 1.048  O22  BKB 36 
BKB O29  O4  O  0 1 N N N 28.920 15.516 2.066  -12.067 1.606  1.922  O29  BKB 37 
BKB O31  O5  O  0 1 N N N 28.134 18.009 2.050  -14.475 2.484  1.180  O31  BKB 38 
BKB S09  S1  S  0 1 N N N 38.003 10.678 1.485  1.309   -2.656 -0.158 S09  BKB 39 
BKB CL36 CL1 CL 0 0 N N N 39.772 7.822  9.981  8.746   -0.015 3.240  CL36 BKB 40 
BKB H1   H1  H  0 1 N N N 36.088 12.196 3.027  -0.759  -2.125 1.751  H1   BKB 41 
BKB H2   H2  H  0 1 N N N 36.188 8.887  0.264  -0.238  -1.995 -2.478 H2   BKB 42 
BKB H3   H3  H  0 1 N N N 28.857 11.590 3.626  -7.209  0.975  1.029  H3   BKB 43 
BKB H4   H4  H  0 1 N N N 27.645 10.613 2.730  -7.779  -0.705 0.889  H4   BKB 44 
BKB H5   H5  H  0 1 N N N 27.354 13.639 3.060  -10.142 0.079  1.095  H5   BKB 45 
BKB H6   H6  H  0 1 N N N 26.262 12.659 2.025  -9.572  1.760  1.235  H6   BKB 46 
BKB H7   H7  H  0 1 N N N 39.538 8.935  7.366  6.055   -0.409 2.397  H7   BKB 47 
BKB H8   H8  H  0 1 N N N 39.026 6.497  3.580  4.264   -0.010 2.389  H8   BKB 48 
BKB H9   H9  H  0 1 N N N 40.297 7.735  3.298  4.536   -1.514 1.476  H9   BKB 49 
BKB H10  H10 H  0 1 N N N 37.275 8.179  2.964  2.174   -1.400 2.097  H10  BKB 50 
BKB H11  H11 H  0 1 N N N 38.445 7.931  1.624  2.036   0.239  1.408  H11  BKB 51 
BKB H12  H12 H  0 1 N N N 38.746 11.328 4.044  2.373   0.318  -1.337 H12  BKB 52 
BKB H13  H13 H  0 1 N N N 37.417 10.148 4.306  2.685   -1.278 -2.065 H13  BKB 53 
BKB H14  H14 H  0 1 N N N 40.397 9.708  4.860  4.827   -1.446 -0.897 H14  BKB 54 
BKB H15  H15 H  0 1 N N N 39.083 9.871  6.074  4.774   0.108  -1.762 H15  BKB 55 
BKB H16  H16 H  0 1 N N N 33.598 12.020 3.166  -3.078  -1.360 1.495  H16  BKB 56 
BKB H17  H17 H  0 1 N N N 33.536 7.434  0.524  -2.480  -0.243 -3.516 H17  BKB 57 
BKB H18  H18 H  0 1 N N N 31.165 8.978  0.112  -4.550  0.384  -2.744 H18  BKB 58 
BKB H19  H19 H  0 1 N N N 28.186 11.955 0.625  -8.505  1.584  -0.996 H19  BKB 59 
BKB H20  H20 H  0 1 N N N 29.291 12.982 1.600  -9.075  -0.097 -1.136 H20  BKB 60 
BKB H21  H21 H  0 1 N N N 25.957 14.733 1.015  -10.868 2.368  -0.789 H21  BKB 61 
BKB H22  H22 H  0 1 N N N 27.388 14.176 0.082  -11.438 0.687  -0.929 H22  BKB 62 
BKB H23  H23 H  0 1 N N N 38.758 5.458  4.986  6.040   1.633  -1.360 H23  BKB 63 
BKB H24  H24 H  0 1 N N N 39.355 5.060  9.195  9.603   1.485  0.976  H24  BKB 64 
BKB H25  H25 H  0 1 N N N 29.439 9.546  1.567  -6.577  0.034  -1.558 H25  BKB 65 
BKB H26  H26 H  0 1 N N N 26.379 17.203 1.176  -13.561 2.329  -0.680 H26  BKB 66 
BKB H27  H27 H  0 1 N N N 28.944 17.617 2.354  -15.287 2.795  0.758  H27  BKB 67 
BKB H28  H28 H  0 1 N N N 33.241 8.632  -0.782 -3.054  -1.934 -3.657 H28  BKB 68 
BKB H29  H29 H  0 1 N N N 31.560 7.966  1.543  -5.113  -1.311 -2.853 H29  BKB 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BKB O10 S09  DOUB N N 1  
BKB C18 C19  SING N N 2  
BKB C18 C16  SING N N 3  
BKB C17 C16  DOUB Y N 4  
BKB C17 C12  SING Y N 5  
BKB C19 N20  SING N N 6  
BKB C16 C15  SING Y N 7  
BKB C27 C28  SING N N 8  
BKB C27 C26  SING N N 9  
BKB S09 C12  SING N N 10 
BKB S09 O11  DOUB N N 11 
BKB S09 N06  SING N N 12 
BKB N30 C28  SING N N 13 
BKB N30 O31  SING N N 14 
BKB C28 O29  DOUB N N 15 
BKB C12 C13  DOUB Y N 16 
BKB C25 C26  SING N N 17 
BKB C25 C24  SING N N 18 
BKB N20 C15  SING N N 19 
BKB N20 C21  SING N N 20 
BKB C15 C14  DOUB Y N 21 
BKB N23 C21  SING N N 22 
BKB N23 C24  SING N N 23 
BKB C21 O22  DOUB N N 24 
BKB C13 C14  SING Y N 25 
BKB C05 N06  SING N N 26 
BKB C05 C04  SING N N 27 
BKB N06 C07  SING N N 28 
BKB C04 N03  SING N N 29 
BKB C07 C08  SING N N 30 
BKB N03 C08  SING N N 31 
BKB N03 C02  SING N N 32 
BKB C32 C02  DOUB Y N 33 
BKB C32 C33  SING Y N 34 
BKB C02 C01  SING Y N 35 
BKB F40 C37  SING N N 36 
BKB F38 C37  SING N N 37 
BKB C37 C33  SING N N 38 
BKB C37 F39  SING N N 39 
BKB C33 C34  DOUB Y N 40 
BKB C01 C35  DOUB Y N 41 
BKB C34 C35  SING Y N 42 
BKB C35 CL36 SING N N 43 
BKB C13 H1   SING N N 44 
BKB C17 H2   SING N N 45 
BKB C24 H3   SING N N 46 
BKB C24 H4   SING N N 47 
BKB C26 H5   SING N N 48 
BKB C26 H6   SING N N 49 
BKB C01 H7   SING N N 50 
BKB C04 H8   SING N N 51 
BKB C04 H9   SING N N 52 
BKB C05 H10  SING N N 53 
BKB C05 H11  SING N N 54 
BKB C07 H12  SING N N 55 
BKB C07 H13  SING N N 56 
BKB C08 H14  SING N N 57 
BKB C08 H15  SING N N 58 
BKB C14 H16  SING N N 59 
BKB C18 H17  SING N N 60 
BKB C19 H18  SING N N 61 
BKB C25 H19  SING N N 62 
BKB C25 H20  SING N N 63 
BKB C27 H21  SING N N 64 
BKB C27 H22  SING N N 65 
BKB C32 H23  SING N N 66 
BKB C34 H24  SING N N 67 
BKB N23 H25  SING N N 68 
BKB N30 H26  SING N N 69 
BKB O31 H27  SING N N 70 
BKB C18 H28  SING N N 71 
BKB C19 H29  SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
BKB SMILES           ACDLabs              12.01 "O=S(=O)(c1cc2CCN(C(=O)NCCCCC(=O)NO)c2cc1)N1CCN(CC1)c1cc(cc(Cl)c1)C(F)(F)F"                                                                                                                         
BKB InChI            InChI                1.03  "InChI=1S/C25H29ClF3N5O5S/c26-19-14-18(25(27,28)29)15-20(16-19)32-9-11-33(12-10-32)40(38,39)21-4-5-22-17(13-21)6-8-34(22)24(36)30-7-2-1-3-23(35)31-37/h4-5,13-16,37H,1-3,6-12H2,(H,30,36)(H,31,35)" 
BKB InChIKey         InChI                1.03  KWCPEZUHMIKCPD-UHFFFAOYSA-N                                                                                                                                                                         
BKB SMILES_CANONICAL CACTVS               3.385 "ONC(=O)CCCCNC(=O)N1CCc2cc(ccc12)[S](=O)(=O)N3CCN(CC3)c4cc(Cl)cc(c4)C(F)(F)F"                                                                                                                       
BKB SMILES           CACTVS               3.385 "ONC(=O)CCCCNC(=O)N1CCc2cc(ccc12)[S](=O)(=O)N3CCN(CC3)c4cc(Cl)cc(c4)C(F)(F)F"                                                                                                                       
BKB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1S(=O)(=O)N3CCN(CC3)c4cc(cc(c4)Cl)C(F)(F)F)CCN2C(=O)NCCCCC(=O)NO"                                                                                                                         
BKB SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1S(=O)(=O)N3CCN(CC3)c4cc(cc(c4)Cl)C(F)(F)F)CCN2C(=O)NCCCCC(=O)NO"                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
BKB "SYSTEMATIC NAME" ACDLabs              12.01 "5-{4-[3-chloro-5-(trifluoromethyl)phenyl]piperazine-1-sulfonyl}-N-[5-(hydroxyamino)-5-oxopentyl]-2,3-dihydro-1H-indole-1-carboxamide"                
BKB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[4-[3-chloranyl-5-(trifluoromethyl)phenyl]piperazin-1-yl]sulfonyl-~{N}-[5-(oxidanylamino)-5-oxidanylidene-pentyl]-2,3-dihydroindole-1-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
BKB "Create component" 2021-11-17 RCSB 
BKB "Initial release"  2023-04-12 RCSB 
# 
