data_2DB
# 
_chem_comp.id                                    2DB 
_chem_comp.name                                  "(S)-(2,3-DIHYDROXYPROPOXY)TRIHYDROXYBORATE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C3 H10 B O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    -1 
_chem_comp.pdbx_initial_date                     2006-09-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        152.919 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2DB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        2ID8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2DB B   B   B -1 1 N N N N N N 51.047 47.180 37.277 ? ? ? B   2DB 1  
2DB O6  O6  O 0  1 N N N N N N 50.513 47.193 35.905 ? ? ? O6  2DB 2  
2DB O4  O4  O 0  1 N N N N N N 50.649 48.406 37.966 ? ? ? O4  2DB 3  
2DB O5  O5  O 0  1 N N N N N N 52.502 47.152 37.284 ? ? ? O5  2DB 4  
2DB C1  C1  C 0  1 N N N N N N 50.865 44.718 37.425 ? ? ? C1  2DB 5  
2DB O1  O1  O 0  1 N N N N N N 50.452 46.050 37.996 ? ? ? O1  2DB 6  
2DB C2  C2  C 0  1 N N S N N N 50.626 43.597 38.417 ? ? ? C2  2DB 7  
2DB O2  O2  O 0  1 N N N N N N 49.230 43.527 38.961 ? ? ? O2  2DB 8  
2DB C3  C3  C 0  1 N N N N N N 51.046 42.249 37.796 ? ? ? C3  2DB 9  
2DB O3  O3  O 0  1 N N N N N N 51.311 41.320 38.944 ? ? ? O3  2DB 10 
2DB HO6 HO6 H 0  1 N N N N N N 49.563 47.196 35.934 ? ? ? HO6 2DB 11 
2DB HO4 HO4 H 0  1 N N N N N N 50.563 48.233 38.896 ? ? ? HO4 2DB 12 
2DB HO5 HO5 H 0  1 N N N N N N 52.823 47.146 36.390 ? ? ? HO5 2DB 13 
2DB H11 1H1 H 0  1 N N N N N N 50.276 44.522 36.517 ? ? ? H11 2DB 14 
2DB H12 2H1 H 0  1 N N N N N N 51.940 44.756 37.194 ? ? ? H12 2DB 15 
2DB H2  H2  H 0  1 N N N N N N 51.256 43.825 39.290 ? ? ? H2  2DB 16 
2DB HO2 HO2 H 0  1 N N N N N N 49.260 43.512 39.910 ? ? ? HO2 2DB 17 
2DB H31 1H3 H 0  1 N N N N N N 50.244 41.852 37.156 ? ? ? H31 2DB 18 
2DB H32 2H3 H 0  1 N N N N N N 51.938 42.363 37.162 ? ? ? H32 2DB 19 
2DB HO3 HO3 H 0  1 N N N N N N 51.367 40.428 38.623 ? ? ? HO3 2DB 20 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2DB B  O6  SING N N 1  
2DB B  O4  SING N N 2  
2DB B  O5  SING N N 3  
2DB B  O1  SING N N 4  
2DB O6 HO6 SING N N 5  
2DB O4 HO4 SING N N 6  
2DB O5 HO5 SING N N 7  
2DB C1 O1  SING N N 8  
2DB C1 C2  SING N N 9  
2DB C1 H11 SING N N 10 
2DB C1 H12 SING N N 11 
2DB C2 O2  SING N N 12 
2DB C2 C3  SING N N 13 
2DB C2 H2  SING N N 14 
2DB O2 HO2 SING N N 15 
2DB C3 O3  SING N N 16 
2DB C3 H31 SING N N 17 
2DB C3 H32 SING N N 18 
2DB O3 HO3 SING N N 19 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2DB SMILES           ACDLabs              10.04 "O[B-](O)(O)OCC(O)CO"                                                 
2DB SMILES_CANONICAL CACTVS               3.341 "OC[C@H](O)CO[B-](O)(O)O"                                             
2DB SMILES           CACTVS               3.341 "OC[CH](O)CO[B-](O)(O)O"                                              
2DB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[B-](O)(O)(O)OC[C@H](CO)O"                                           
2DB SMILES           "OpenEye OEToolkits" 1.5.0 "[B-](O)(O)(O)OCC(CO)O"                                               
2DB InChI            InChI                1.03  "InChI=1S/C3H10BO6/c5-1-3(6)2-10-4(7,8)9/h3,5-9H,1-2H2/q-1/t3-/m0/s1" 
2DB InChIKey         InChI                1.03  KLKDDPLTQSQDLA-VKHMYHEASA-N                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2DB "SYSTEMATIC NAME" ACDLabs              10.04 "trihydroxy[(2S)-propane-1,2,3-triolato-kappaO~1~]borate(1-)" 
2DB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S)-2,3-dihydroxypropoxy]-trihydroxy-boron"                
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2DB "Create component"  2006-09-19 EBI  
2DB "Modify descriptor" 2011-06-04 RCSB 
2DB "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            2DB 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               B 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
