data_607
#

_chem_comp.id                                   607
_chem_comp.name                                 "2-(2'-AMINO-5-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}-6-OXIDO-1,1'-BIPHENYL-3-YL)SUCCINATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H19 N5 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        CRA_18607
_chem_comp.pdbx_formal_charge                   -2
_chem_comp.pdbx_initial_date                    2003-03-14
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       457.438
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    607
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1O36
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
607  C1      C1      C   0  1  Y  N  N  44.304  -3.064  26.271   5.884   0.106   0.018  C1      607   1  
607  C2      C2      C   0  1  Y  N  N  44.684  -1.696  26.261   5.770   1.215  -0.828  C2      607   2  
607  C3      C3      C   0  1  Y  N  N  44.652  -0.896  27.416   4.541   1.702  -1.171  C3      607   3  
607  C4      C4      C   0  1  Y  N  N  44.235  -1.502  28.566   3.389   1.097  -0.681  C4      607   4  
607  C5      C5      C   0  1  Y  N  N  43.874  -2.776  28.626   3.485  -0.020   0.171  C5      607   5  
607  C6      C6      C   0  1  Y  N  N  43.885  -3.605  27.514   4.742  -0.516   0.514  C6      607   6  
607  C7      C7      C   0  1  N  N  N  44.350  -3.836  25.079   7.220  -0.410   0.381  C7      607   7  
607  N1      N1      N   0  1  N  N  N  44.178  -5.140  25.096   7.331  -1.466   1.186  N1      607   8  
607  N2      N2      N   1  1  N  N  N  44.568  -3.223  23.940   8.315   0.180  -0.097  N2      607   9  
607  N3      N3      N   0  1  Y  N  N  44.109  -1.035  29.759   2.042   1.346  -0.840  N3      607  10  
607  N4      N4      N   0  1  Y  N  N  43.512  -3.148  29.846   2.219  -0.392   0.486  N4      607  11  
607  C8      C8      C   0  1  Y  N  N  43.684  -2.019  30.488   1.366   0.407  -0.106  C8      607  12  
607  "C1'"   "C1'"   C   0  1  Y  N  N  43.422  -1.902  31.869  -0.104   0.312   0.003  "C1'"   607  13  
607  "C2'"   "C2'"   C   0  1  Y  N  N  43.104  -3.006  32.671  -0.727  -0.938   0.002  "C2'"   607  14  
607  "C3'"   "C3'"   C   0  1  Y  N  N  42.843  -2.880  34.028  -2.100  -1.029   0.103  "C3'"   607  15  
607  CVX     "C31'"  C   0  1  N  N  R  42.467  -4.125  34.870  -2.763  -2.382   0.101  CVX     607  16  
607  CWX     "C32'"  C   0  1  N  N  N  40.958  -4.298  34.642  -2.255  -3.193   1.266  CWX     607  17  
607  OXX     "O33'"  O   0  1  N  N  N  40.599  -5.104  33.806  -1.430  -2.715   2.027  OXX     607  18  
607  OYX     "O34'"  O  -1  1  N  N  N  40.203  -3.612  35.300  -2.668  -4.326   1.447  OYX     607  19  
607  C6X     "C42'"  C   0  1  N  N  N  42.783  -3.981  36.433  -2.438  -3.108  -1.206  C6X     607  20  
607  C7X     "C43'"  C   0  1  N  N  N  43.421  -5.251  37.109  -3.199  -4.407  -1.262  C7X     607  21  
607  O8X     "O44'"  O   0  1  N  N  N  43.200  -6.353  36.628  -3.967  -4.738  -0.300  O8X     607  22  
607  O9X     "O45'"  O  -1  1  N  N  N  44.120  -5.080  38.109  -3.075  -5.176  -2.272  O9X     607  23  
607  "C4'"   "C4'"   C   0  1  Y  N  N  42.911  -1.636  34.589  -2.871   0.114   0.207  "C4'"   607  24  
607  "C5'"   "C5'"   C   0  1  Y  N  N  43.222  -0.496  33.867  -2.267   1.369   0.210  "C5'"   607  25  
607  "C6'"   "C6'"   C   0  1  Y  N  N  43.475  -0.655  32.508  -0.877   1.472   0.113  "C6'"   607  26  
607  "O6'"   "O6'"   O  -1  1  N  N  N  43.780   0.447  31.746  -0.281   2.691   0.116  "O6'"   607  27  
607  C1B     "C1''"  C   0  1  Y  N  N  43.279   0.733  34.544  -3.098   2.593   0.320  C1B     607  28  
607  C2B     "C2''"  C   0  1  Y  N  N  44.474   1.440  34.703  -3.148   3.507  -0.739  C2B     607  29  
607  C3B     "C3''"  C   0  1  Y  N  N  44.557   2.635  35.404  -3.933   4.646  -0.627  C3B     607  30  
607  C4B     "C4''"  C   0  1  Y  N  N  43.429   3.178  35.974  -4.651   4.881   0.529  C4B     607  31  
607  C5B     "C5''"  C   0  1  Y  N  N  42.216   2.523  35.841  -4.598   3.981   1.580  C5B     607  32  
607  C6B     "C6''"  C   0  1  Y  N  N  42.143   1.317  35.135  -3.826   2.841   1.481  C6B     607  33  
607  N2B     "N2''"  N   0  1  N  N  N  45.628   1.083  34.203  -2.422   3.267  -1.906  N2B     607  34  
607  HC2     HC2     H   0  1  N  N  N  45.008  -1.237  25.341   6.660   1.690  -1.213  HC2     607  35  
607  HC3     HC3     H   0  1  N  N  N  44.939   0.142  27.403   4.464   2.558  -1.824  HC3     607  36  
607  HC6     HC6     H   0  1  N  N  N  43.580  -4.638  27.600   4.829  -1.375   1.163  HC6     607  37  
607  HH11    HH11    H   0  0  N  N  N  44.011  -5.584  25.991   8.208  -1.804   1.425  HH11    607  38  
607  HH12    HH12    H   0  0  N  N  N  44.162  -5.764  24.319   6.534  -1.896   1.535  HH12    607  39  
607  HH21    HH21    H   0  0  N  N  N  44.691  -2.229  23.923   8.234   0.949  -0.683  HH21    607  40  
607  HH22    HH22    H   0  0  N  N  N  44.663  -3.725  23.082   9.192  -0.156   0.144  HH22    607  41  
607  HN3     HN3     H   0  1  N  N  N  44.276  -0.118  30.071   1.646   2.054  -1.372  HN3     607  42  
607  "HC2'"  "HC2'"  H   0  0  N  N  N  43.052  -3.985  32.220  -0.132  -1.836  -0.079  "HC2'"  607  43  
607  H31B    H31B    H   0  0  N  N  N  42.986  -4.981  34.466  -3.843  -2.258   0.189  H31B    607  44  
607  H42A    H42A    H   0  0  N  N  N  43.451  -3.151  36.601  -2.725  -2.481  -2.050  H42A    607  45  
607  H42B    H42B    H   0  0  N  N  N  41.879  -3.759  36.982  -1.368  -3.311  -1.252  H42B    607  46  
607  "HC4'"  "HC4'"  H   0  0  N  N  N  42.707  -1.525  35.642  -3.945   0.033   0.285  "HC4'"  607  47  
607  H3B     "H3''"  H   0  1  N  N  N  45.502   3.146  35.508  -3.978   5.351  -1.444  H3B     607  48  
607  H4B     "H4''"  H   0  1  N  N  N  43.494   4.110  36.519  -5.256   5.771   0.614  H4B     607  49  
607  H5B     "H5''"  H   0  1  N  N  N  41.321   2.967  36.253  -5.162   4.172   2.480  H5B     607  50  
607  H6B     "H6''"  H   0  1  N  N  N  41.183   0.825  35.046  -3.788   2.142   2.303  H6B     607  51  
607  HN2A    HN2A    H   0  0  N  N  N  46.325   1.783  34.215  -2.465   3.898  -2.642  HN2A    607  52  
607  HN2B    HN2B    H   0  0  N  N  N  45.562   0.561  33.377  -1.874   2.470  -1.981  HN2B    607  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
607  C1     C2      DOUB  Y  N   1  
607  C1     C6      SING  Y  N   2  
607  C1     C7      SING  N  N   3  
607  C2     C3      SING  Y  N   4  
607  C2     HC2     SING  N  N   5  
607  C3     C4      DOUB  Y  N   6  
607  C3     HC3     SING  N  N   7  
607  C4     C5      SING  Y  N   8  
607  C4     N3      SING  Y  N   9  
607  C5     C6      DOUB  Y  N  10  
607  C5     N4      SING  Y  N  11  
607  C6     HC6     SING  N  N  12  
607  C7     N1      SING  N  N  13  
607  C7     N2      DOUB  N  N  14  
607  N1     HH11    SING  N  N  15  
607  N1     HH12    SING  N  N  16  
607  N2     HH21    SING  N  N  17  
607  N2     HH22    SING  N  N  18  
607  N3     C8      SING  Y  N  19  
607  N3     HN3     SING  N  N  20  
607  N4     C8      DOUB  Y  N  21  
607  C8     "C1'"   SING  Y  N  22  
607  "C1'"  "C2'"   DOUB  Y  N  23  
607  "C1'"  "C6'"   SING  Y  N  24  
607  "C2'"  "C3'"   SING  Y  N  25  
607  "C2'"  "HC2'"  SING  N  N  26  
607  "C3'"  CVX     SING  N  N  27  
607  "C3'"  "C4'"   DOUB  Y  N  28  
607  CVX    CWX     SING  N  N  29  
607  CVX    C6X     SING  N  N  30  
607  CVX    H31B    SING  N  N  31  
607  CWX    OXX     DOUB  N  N  32  
607  CWX    OYX     SING  N  N  33  
607  C6X    C7X     SING  N  N  34  
607  C6X    H42A    SING  N  N  35  
607  C6X    H42B    SING  N  N  36  
607  C7X    O8X     DOUB  N  N  37  
607  C7X    O9X     SING  N  N  38  
607  "C4'"  "C5'"   SING  Y  N  39  
607  "C4'"  "HC4'"  SING  N  N  40  
607  "C5'"  "C6'"   DOUB  Y  N  41  
607  "C5'"  C1B     SING  Y  N  42  
607  "C6'"  "O6'"   SING  N  N  43  
607  C1B    C2B     DOUB  Y  N  44  
607  C1B    C6B     SING  Y  N  45  
607  C2B    C3B     SING  Y  N  46  
607  C2B    N2B     SING  N  N  47  
607  C3B    C4B     DOUB  Y  N  48  
607  C3B    H3B     SING  N  N  49  
607  C4B    C5B     SING  Y  N  50  
607  C4B    H4B     SING  N  N  51  
607  C5B    C6B     DOUB  Y  N  52  
607  C5B    H5B     SING  N  N  53  
607  C6B    H6B     SING  N  N  54  
607  N2B    HN2A    SING  N  N  55  
607  N2B    HN2B    SING  N  N  56  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
607  SMILES            ACDLabs               10.04  "[O-]C(=O)CC(C([O-])=O)c4cc(c2nc1cc(ccc1n2)\C(=[NH2+])N)c([O-])c(c3ccccc3N)c4"  
607  SMILES_CANONICAL  CACTVS                3.341  "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cc(cc(c3[O-])c4ccccc4N)[C@@H](CC([O-])=O)C([O-])=O"  
607  SMILES            CACTVS                3.341  "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cc(cc(c3[O-])c4ccccc4N)[CH](CC([O-])=O)C([O-])=O"  
607  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1ccc(c(c1)c2cc(cc(c2[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N)[C@@H](CC(=O)[O-])C(=O)[O-])N"  
607  SMILES            "OpenEye OEToolkits"  1.5.0  "c1ccc(c(c1)c2cc(cc(c2[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N)C(CC(=O)[O-])C(=O)[O-])N"  
607  InChI             InChI                 1.03   "InChI=1S/C24H21N5O5/c25-17-4-2-1-3-13(17)15-7-12(14(24(33)34)10-20(30)31)8-16(21(15)32)23-28-18-6-5-11(22(26)27)9-19(18)29-23/h1-9,14,32H,10,25H2,(H3,26,27)(H,28,29)(H,30,31)(H,33,34)/p-2/t14-/m1/s1"  
607  InChIKey          InChI                 1.03   KLIWSPNZLMZLEF-CQSZACIVSA-L  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
607  "SYSTEMATIC NAME"  ACDLabs               10.04  "(2R)-2-(2'-amino-5-{5-[amino(iminio)methyl]-1H-benzimidazol-2-yl}-6-oxidobiphenyl-3-yl)butanedioate"  
607  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R)-2-[3-[5-(amino-azaniumylidene-methyl)-1H-benzimidazol-2-yl]-5-(2-aminophenyl)-4-oxido-phenyl]butanedioate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
607  "Create component"      2003-03-14  RCSB  
607  "Modify aromatic_flag"  2011-06-04  RCSB  
607  "Modify descriptor"     2011-06-04  RCSB  
607  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     607
_pdbx_chem_comp_synonyms.name        CRA_18607
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
